Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0666
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0100 + 5296783-5297568                                           38   0.005
10_05_0058 + 8662996-8663826                                           36   0.028
10_02_0099 - 5295513-5296400                                           34   0.11 
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    32   0.35 
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    30   1.4  
05_04_0064 - 17613070-17614749                                         27   9.9  

>10_02_0100 + 5296783-5297568
          Length = 261

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
 Frame = +3

Query: 27  RDLDKIIKMSVEEDVMKIQKKLTKMTSEDG------TGQXXXXXXXXXXQTMAINLDVLT 188
           ++L +  K S+ E+V +I+ KL  +  EDG      + +          ++  +  + L 
Sbjct: 45  QELRRAKKSSMAEEVERIKGKL--VGGEDGGRPSSDSSEETVVELLRALRSTPMTFETLE 102

Query: 189 KTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 284
            +RIG T++ LR+    ++V  L   L KNWK
Sbjct: 103 ASRIGKTISGLRRKHSSEKVRGLAAALYKNWK 134


>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 60  EEDVMKIQKKLTKMTSEDG-------TGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNA 218
           E++V KI+ KL  +  EDG       +            Q + +  + L  ++IG  ++ 
Sbjct: 76  EDEVEKIKTKLVAVVGEDGGNPRSDSSSSEAVVELLRALQAVPMTFETLEASKIGKAISG 135

Query: 219 LRKSSKDDEVISLCKTLIKNWK 284
           LRK S  ++V  L   L K+WK
Sbjct: 136 LRKHS-SEQVRDLAAALYKSWK 156


>10_02_0099 - 5295513-5296400
          Length = 295

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
 Frame = +3

Query: 66  DVMKIQKKLTKMTSEDGTG-----------QXXXXXXXXXXQTMAINLDVLTKTRIGMTV 212
           +V +I+ KL  +  EDG+G           +          Q + +  + L  ++I  T+
Sbjct: 76  EVERIKVKLVAVGGEDGSGGGGGGTSADSSEDAVVDLLRDLQAVPMTFETLEASKISKTI 135

Query: 213 NALRKSSKDDEVISLCKTLIKNWK 284
           + LRK S  ++V  L   L K+WK
Sbjct: 136 SGLRKHSSSEKVRRLAAALYKSWK 159


>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 537 IYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNG 650
           ++  F   + +YK + RS + NLKD  NP LR    +G
Sbjct: 355 LFKLFGGVNKKYKEKGRSLLFNLKDKSNPELRERVLSG 392


>06_03_0640 -
           23059473-23060489,23060592-23060651,23063163-23063283,
           23063476-23065496
          Length = 1072

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 567 RYKNRVRSRVANLKDPKNPTLRTNFFNG 650
           +YK + RS + NLKD  NP LR    +G
Sbjct: 341 KYKEKGRSLLFNLKDKSNPVLRGRVLSG 368


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 216 ALRKSSKDDEVISLCKTLIKNWKKFLST 299
           A+RK++KD E ++   + + +W+KF  T
Sbjct: 322 AIRKTAKDAEAVTPVLSAMDSWEKFTQT 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,939
Number of Sequences: 37544
Number of extensions: 182500
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)