Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0666
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   5.0  

>Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical
           protein T24H10.1 protein.
          Length = 308

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/87 (36%), Positives = 43/87 (49%)
 Frame = +3

Query: 393 ASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRY 572
           ASFPP+    D  RLK  +LL  AL+  G+       P          +Y+  ++T+  Y
Sbjct: 136 ASFPPKHLENDETRLKSAQLLLSALRF-GDMPQGTLDPEELAVQIEEKLYSVHRDTNKSY 194

Query: 573 KNRVRSRVANLKDPKNPTLRTNFFNGV 653
              VRSR+ NL+D KN  LR N   GV
Sbjct: 195 SAAVRSRIFNLRDKKNLALRENVLTGV 221



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 168 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 284
           ++++++ KT IG+ VN +RK   DD V    K +IK+WK
Sbjct: 40  MSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWK 78


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 209 SHSYSCFR*DVQVDSHCLKC 150
           SHS  C R DV  D+HC KC
Sbjct: 554 SHSPKCPRRDVPRDTHCPKC 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,157
Number of Sequences: 27780
Number of extensions: 179018
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)