Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0665
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q114J0 Cluster: Extracellular ligand-binding receptor; ...    36   1.3  
UniRef50_UPI0000D5637F Cluster: PREDICTED: similar to Protein-S-...    34   3.0  
UniRef50_Q9DE32 Cluster: Telomerase reverse transcriptase; n=2; ...    33   7.0  

>UniRef50_Q114J0 Cluster: Extracellular ligand-binding receptor;
           n=1; Trichodesmium erythraeum IMS101|Rep: Extracellular
           ligand-binding receptor - Trichodesmium erythraeum
           (strain IMS101)
          Length = 512

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 496 ILSLSIKKFYSLFEIQTALFSSASGTLEILHALPLPNFFSNQSRSRPKKLIKLAI 660
           I +L ++  Y    +   + S+ +G+LE+LH +P   F  N SR    +++K+ I
Sbjct: 109 INNLKVEYPYYTIAVSMQISSNLNGSLEVLHGVPHAQFHGNNSRLVDSRMLKVTI 163


>UniRef50_UPI0000D5637F Cluster: PREDICTED: similar to
           Protein-S-isoprenylcysteine O-methyltransferase
           (Isoprenylcysteine carboxylmethyltransferase)
           (Prenylcysteine carboxyl methyltransferase) (pcCMT)
           (Prenylated protein carboxyl methyltransferase) (PPMT)
           isoform 2; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to Protein-S-isoprenylcysteine
           O-methyltransferase (Isoprenylcysteine
           carboxylmethyltransferase) (Prenylcysteine carboxyl
           methyltransferase) (pcCMT) (Prenylated protein carboxyl
           methyltransferase) (PPMT) isoform 2 - Tribolium
           castaneum
          Length = 281

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 170 LQLIALCIFNHYYI*TF*LFIHMIFIFNFYIN*LQYY*KLF*NHFTFTI 316
           L    +C+FNHYY  T  L ++ + +F + +N + ++ K F N F F I
Sbjct: 18  LVFFVICMFNHYYGITN-LVVNTLIVFFYAVN-VYFFLKFFYNEFAFAI 64


>UniRef50_Q9DE32 Cluster: Telomerase reverse transcriptase; n=2;
           Xenopus|Rep: Telomerase reverse transcriptase - Xenopus
           laevis (African clawed frog)
          Length = 1191

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +1

Query: 499 LSLSIKKFYSLFEIQTALFSSASGTLEILHALPLPNFFSNQSRSRPKK 642
           LS+S KK +S   I  +L S+ SG+ +++  + L NF + Q+  +PK+
Sbjct: 381 LSISYKKGFSESFILNSLDSTPSGSQKLVETIFLSNFLAEQNFDQPKR 428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,149,972
Number of Sequences: 1657284
Number of extensions: 10553210
Number of successful extensions: 18956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18947
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)