Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0665
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)                   29   5.0  
SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)                 28   8.7  

>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
          Length = 563

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 LHALPLPNFFSNQSRSRPKKLIKLAIFHC 669
           L+AL + N+ +NQ+  RP     LA  HC
Sbjct: 494 LNALQISNYLNNQANCRPVNPFFLAAVHC 522


>SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 654 KFN*FLWSRPGLVRKKIRKW*CMKYFQCS 568
           +FN   W+ PG +  ++  + C+KY  CS
Sbjct: 310 QFNPVTWNTPGSICMRVELYECVKYSGCS 338


>SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)
          Length = 849

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 511 IKKFYSLFEIQTALFSSASGTLEILHALPLPNFFSNQSRSRPKK 642
           + ++ +L+ + TAL++  +G    +   PLP F ++  R   +K
Sbjct: 795 VSRYLTLYLLVTALYNGIAGVTVTVAVTPLPRFDTSPKRRNIRK 838


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,373
Number of Sequences: 59808
Number of extensions: 311581
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)