Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0665
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 368 YEFLKGNLKWNEI 406
           Y F+ GNLKW +I
Sbjct: 566 YAFIPGNLKWLDI 578


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 693 RMFCDSCTAVKNRKFN*FLWSRPGLVRKKI 604
           +M  D    + N+KF+  + S+P   R+K+
Sbjct: 249 QMLADKIGKMVNQKFSELIQSKPQHARRKV 278


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 636 WSRPGLVRKKIRKW*CMKYFQCSGCRR 556
           +SRP L++  IR     K F C  C R
Sbjct: 52  FSRPWLLQGHIRTHTGEKPFSCQHCNR 78


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 YEFLKGNLKWNEIFIANKYFLL 433
           YEFL     +++I++ + YF++
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIM 151


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 YEFLKGNLKWNEIFIANKYFLL 433
           YEFL     +++I++ + YF++
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIM 151


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 YEFLKGNLKWNEIFIANKYFLL 433
           YEFL     +++I++ + YF++
Sbjct: 181 YEFLNAIHHYDDIWLPDTYFIM 202


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 YEFLKGNLKWNEIFIANKYFLL 433
           YEFL     +++I++ + YF++
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIM 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,160
Number of Sequences: 438
Number of extensions: 3484
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)