Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0664
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 1.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 26 4.0
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 5.3
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 5.3
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 7.0
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 9.3
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 155 DLESIINQIFTSAKPPTQLHPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGEC 325
D ESI +F S K T++ PV+ + AP P +S +L T+ E +C
Sbjct: 731 DKESIFGSLFGSKKKQTEIPPVSSSPPHNDAPPKAKP-ISAPSELP-NTTSVAEAKC 785
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 324 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 232
HS ++P+E+W R E P + D L+ T
Sbjct: 45 HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 303 PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 431
P + +T TC+ RP +S TS++ ES + TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 444 LPTRDRQQIPSRPGRRP 494
LP+R +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 630 SSTGSTLRMATIQGNSPNLVSPSTS 556
++ G TLR+ T+ GN VSP TS
Sbjct: 380 AALGGTLRVPTLTGNVDLRVSPGTS 404
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 243 GLHRPWCL 266
GLHRPWCL
Sbjct: 685 GLHRPWCL 692
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 355 IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 239
+GR+A+V++D L G A + + R +R G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 385 DVCSVSDNGVIGRIAQVIVDALPFLAV 305
++ + NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 355 IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 239
+GR+A+V++D L G A + + R +R G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 582 PNLVSPSTSPVVRKATPSGFR 520
PN +SPST P++ + S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +2
Query: 83 YPKMYKLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLH-PVTQPSVADRAPSTL 259
YP Y + A++ + + N F + P + L P T S + P ++
Sbjct: 372 YPISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQLPKSV 431
Query: 260 VPGVSTNDDLSCQTSD 307
PG++ D S +S+
Sbjct: 432 TPGLAYPHDSSMLSSN 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,112
Number of Sequences: 5004
Number of extensions: 50597
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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