Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0664
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.45
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 3.1
03_02_0915 + 12360079-12360095,12360225-12361353 29 3.1
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.1
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094... 28 5.5
07_01_0724 + 5529642-5531141 28 7.2
04_04_0819 - 28312667-28313219,28315157-28316430 28 7.2
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 7.2
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 27 9.6
05_06_0231 - 26587900-26587980,26588291-26588356,26588452-265885... 27 9.6
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 385 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 284
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 443 APDQRPPTD--PITPRPETLPMNQGCGWRNPDGVA 541
A D P TD P+ P+P T G WRNP A
Sbjct: 43 AADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAA 77
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 458 PPTDPITPRPETLPMNQGCGWRNPDGVAFRTTGDVDGETK 577
PP + I PM+QG G + D A T +VD E K
Sbjct: 42 PPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEK 81
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 560 VDGETKFGEFPWMVAILKVEPVDDNEP 640
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>01_06_0725 +
31508156-31508277,31508950-31509118,31509311-31509406,
31510037-31510097,31510387-31510451,31511104-31511178,
31511276-31511351,31512140-31512303,31512398-31512421
Length = 283
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 454 ETANRSHHAQAGDPA-NEPGLRLAEP*RRCLP 546
E RSHH D N+PG+R + RRC P
Sbjct: 53 EEDTRSHHEALLDRTKNKPGIRAVDVRRRCCP 84
>07_01_0724 + 5529642-5531141
Length = 499
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 404 SGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWRNP 529
+ P ++++ C A D+ DP + RP+ + ++ GW P
Sbjct: 122 AAPFAAFLADACAAGDREGRPDPFSRRPDWVVVDFAHGWLPP 163
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 82 ISKDVQASIHRLSRVGVRAEHGHRGSGVDH*SDLHISEAPDAIA 213
+ K+ +S RL + HGH G G H H+S P A
Sbjct: 3 LHKEASSSSSRLDAAPLLPHHGHGGGGAGH----HLSSQPKTFA 42
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 170 INQIFTSAKPPTQLHPVTQPSVADRAPSTLVPGVSTN 280
I + + P Q HP+T+PSV S + GVS +
Sbjct: 389 IPTVSSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNS 425
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 98 KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLHPVTQPSVADRAPSTLVP 265
K+L FL Q + ++ ++ PPTQ P S A AP+T VP
Sbjct: 63 KVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVP 118
>05_06_0231 -
26587900-26587980,26588291-26588356,26588452-26588597,
26589182-26589374,26589465-26589515,26590165-26590311,
26590365-26590463,26590557-26590760,26590839-26590887,
26590979-26591074,26591367-26591457,26591753-26591823,
26592170-26592222,26592740-26592828,26593322-26593517,
26593975-26594088,26594217-26594291
Length = 606
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 168 IDSRSPVSMFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCSS 34
+ R+ V + C+H D RKP R + I +S TL I + CSS
Sbjct: 380 VHDRAQVFVSCSHGDVRKP--RYVGIVERWSSK-TLQIPSLSCSS 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,190
Number of Sequences: 37544
Number of extensions: 425424
Number of successful extensions: 1555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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