Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0664
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 31 1.1
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 30 1.8
SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17357| Best HMM Match : IMS (HMM E-Value=0) 29 4.2
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74) 28 5.6
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22) 28 7.4
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.4
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 27 9.8
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 27 9.8
SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 374 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 514
G N + P Y+ V P +PP P TP+P P + GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 365 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 523
+T G I R G G +++D+C R D E + GCG R
Sbjct: 60 VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112
>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 159 WSRSLIRSSHQRSPRRNCTRSRSL 230
W R+L+R +R P RNC RS+
Sbjct: 32 WIRTLVRLLEKRRPLRNCWEGRSV 55
>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
Length = 990
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 320 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 493
+C++ LCN+ I D +N P S +D C PD PP TP P
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749
Query: 494 LPMNQG 511
P G
Sbjct: 750 YPCRTG 755
>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
Length = 808
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 140 NMDTGDLESIINQIFTSAKPPTQLHPVTQPSVADRAP 250
N T +LES IN++ + PP Q + ++ P +D P
Sbjct: 184 NFGTNNLESAINEVVPALTPP-QTNIISVPGKSDNKP 219
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 518 WRNPDG---VAFRTTGDVDGETKFGEFPWMVAILKVEPVDDNEP 640
WR +G VA T GD+ E + PW+V + D NEP
Sbjct: 4088 WRFNEGEGAVAIDTVGDI--EMELASSPWLVPSWEFSDADMNEP 4129
>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
Length = 767
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 104 LFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLHPVTQPSVADRAPSTLVPGVSTND 283
+F L + AQ D+G SA+ T + T+P ++ PS + ST+
Sbjct: 368 IFSSTLGFSKAQPEDSGTWVFNAKNAMGSARAATDIIVATKPKFIEKPPSKVTAFQSTST 427
Query: 284 DLSCQ 298
L C+
Sbjct: 428 KLECK 432
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 379 CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRR 272
C+VS+N V+G I ++ P L GG+ I+ R
Sbjct: 1903 CNVSENAVVGAIIAELLAVDPDLGTGGVVSYRILTR 1938
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 171 LIRSSHQRSPRRNCTRSRSLVSLIGLHRPWCLASLRTMTFRARPPTAKKG 320
L S + S NC RS + V L +PW ++T+ R + A G
Sbjct: 1270 LTNSPKRWSSPLNCPRSATSVRLHNTDKPWITPRIKTLISRRQSALAAHG 1319
>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 98 KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLHPVTQPSVADRA 247
K + +G + S +Q DT L++ NQ+ TS K PT+ + Q +RA
Sbjct: 1024 KFVSVGRMRSLFSQ-ADTKVLQAACNQLITSKKAPTRSQILRQIRSDERA 1072
>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 281 DDLSCQTSDGQEGECVNY 334
DD+ CQ++DG + +C +Y
Sbjct: 104 DDIRCQSADGPQRKCASY 121
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = +2
Query: 272 STNDDLSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPD 451
ST+ SC +DG +G +Y + + NT DG +V C + DV L
Sbjct: 220 STSSTNSCPNTDGVKGG--SYQVRESCPNT---DGVQGGSYQVNE--CIRFNDVIFLCKS 272
Query: 452 QRPPTDPITPRPETLPMNQ 508
Q PP+ P +NQ
Sbjct: 273 QGPPSPSAGPTKPPRSVNQ 291
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 499 WQGLRPGRDGICWRSLVGSQTADVDVR-*TRATADSYIDDVCSVSDN 362
W+GL P DGI RS +G +V TR TA C+ SD+
Sbjct: 231 WEGLNPPADGIKIRSWLGDPDWKPEVAGKTRKTAAHPNSRFCAPSDH 277
>SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 98 KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLHPVTQPSVADRA 247
K + +G + S +Q DT L++ NQ+ TS K PT+ + Q +RA
Sbjct: 58 KFVSVGRMRSLFSQ-ADTEVLQAACNQLITSKKAPTRSQILRQIRSDERA 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,666,874
Number of Sequences: 59808
Number of extensions: 445247
Number of successful extensions: 1607
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -