Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0664
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.93 
AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical...    30   1.6  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    30   1.6  
U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    29   2.1  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    29   2.8  
AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 541 GNAVRVPPAAALVHWQGLRPGRDGI 467
           G + + PP A+L HW  LR G +GI
Sbjct: 304 GQSQKAPPMASLWHWAHLRVGSEGI 328


>AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical
           protein F42A6.1 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 144 MFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCS 37
           ++C  +DAR    R   +    S  +TLT+S S+C+
Sbjct: 25  LWCILSDARNRNRREFLLVASQSVTVTLTVSTSECA 60


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 294 ARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIP 473
           ARP T+  G A+      R   P + +   +    SA + V R  T A  + +  R + P
Sbjct: 355 ARPQTSS-GIAAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRVPTGAASMTSSSRIRPP 413

Query: 474 SRPGRRP 494
           SRPG RP
Sbjct: 414 SRPGSRP 420


>U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical
           protein F58F12.4 protein.
          Length = 150

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
 Frame = +2

Query: 146 DTGDLESIINQIFTSAKPPTQLHPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGEC 325
           ++ DL + IN+   S    +Q+   TQ   +   PST +P      DL C + +     C
Sbjct: 26  ESSDLANFINET-DSEMTSSQIESSTQIPSSTMNPSTKLPSSMRGKDLHCPSIENAVSSC 84

Query: 326 ------VNYYLCNAAN 355
                 V Y  C  AN
Sbjct: 85  PKDSKWVYYTCCGGAN 100


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 541 GNAVRVPPAAALVHWQGLRPGRDGI 467
           G + + PP A+L HW  L+ G  GI
Sbjct: 329 GQSQKAPPMASLWHWASLKVGSSGI 353


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 341 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 460
           C +  ++I + G    ++ +  GPCS++ID C   PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137


>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 89  KMYKLLFIGFLASACAQNMDT 151
           K +KLLFIGFL   C  N+ T
Sbjct: 2   KYWKLLFIGFLIVNCHDNIPT 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,010
Number of Sequences: 27780
Number of extensions: 315229
Number of successful extensions: 1204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)