Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0664
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila... 32 0.28
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila... 32 0.37
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly... 30 1.5
At3g09000.1 68416.m01053 proline-rich family protein 30 1.5
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 29 2.6
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 3.5
At1g09155.1 68414.m01021 SKP1 interacting partner 3-related low ... 29 3.5
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi... 28 4.6
At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa... 28 6.1
At3g58600.1 68416.m06531 expressed protein hypothetical protein ... 28 6.1
At3g54320.1 68416.m06003 ovule development protein, putative sim... 28 6.1
At3g08670.1 68416.m01007 expressed protein 28 6.1
At5g19340.1 68418.m02305 expressed protein 27 8.0
>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 548
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 476 TPRPETLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 589
T RP T+ N C G PDGV +T GD DGE K F
Sbjct: 101 TIRPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140
>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 547
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 482 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETK 577
RP T+ N C G PDG +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140
>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein similar to 70 kDa
peptidylprolyl isomerase (Peptidylprolyl cis-trans
isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
aestivum]; FKBP-type peptidyl-prolyl cis-trans
isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 229
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 270 SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI 392
SLR R+ P++ S+ST+ A R LS+ TSS+
Sbjct: 26 SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +3
Query: 234 SLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVAR 413
S+ GL RP S R+ + RP T + S + T RP+T + ++S+ A
Sbjct: 140 SVAGLRRPSSSGSSRSTS---RPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLT 196
Query: 414 VHR--TSTSAVWLPTRD----RQQIPSRPGRRP 494
R TST+A T R P+R RP
Sbjct: 197 AARATTSTAAPRTTTTSSGSARSATPTRSNPRP 229
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 341 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCL---APDQRPPTDPITPRPETLPMNQG 511
C A+N ++ G ++ R GPC + V C+ AP P + + P N
Sbjct: 131 CGASNTCMVCRGA-ILSWRYKCGPCMLDVHVECVNSSAPAATEPQMDLNTSQDPQPYNDE 189
Query: 512 CG 517
CG
Sbjct: 190 CG 191
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Frame = +2
Query: 119 LASACAQNMDTGDLESIINQIFTSA---KPPTQLHP-VTQPSVADRAPSTLVPGVSTNDD 286
+ S+ A ++D G+LES ++ + + + P ++ S D AP+ +P VST++
Sbjct: 371 VTSSEALSVDKGNLESAKSESSSESVLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEP 430
Query: 287 LSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGS--GPCSS 421
+ +G+ ECVN A+ + +G +++ RV G CSS
Sbjct: 431 M----YEGE--ECVNTVPPVCADKEPVYEGESLLGKRVEKDVGDCSS 471
>At1g09155.1 68414.m01021 SKP1 interacting partner 3-related low
similarity to SKP1 interacting partner 3 [Arabidopsis
thaliana] GI:10716951
Length = 289
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 271 DARHQGRWSPISDTRLRDRVQL 206
D RH WSP SD+R + VQL
Sbjct: 109 DQRHYWSWSPRSDSRFSEGVQL 130
>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 481 GRDGICWRSLVGSQTADVDVR*TRATADSYID 386
G DG+ WR+L+G+ +A D++ + A I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519
>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 529
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 174 LMIDSRSPVSMFCAHADA--RKPMNRSLYIFGYYSQNITLTISNSQCSS*SNR 22
L+++ P + + A KP S+Y YS + T T S+S C S +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174
>At3g58600.1 68416.m06531 expressed protein hypothetical protein
F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
Length = 302
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 158 LESIINQIFTSAKPPTQLHPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGE 322
+E+ I I PP L PVT A ++PS+L P +S Q D + E
Sbjct: 220 IETTIPSIILPPPPPGPLSPVT---TAQKSPSSLPPSLSLQRSSEQQDLDTKREE 271
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 315 KGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRP 482
K +T TC+ P + +S + TSS +S R R + P+ D+ P+ P
Sbjct: 2 KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSP 57
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.9 bits (59), Expect = 6.1
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Frame = +3
Query: 162 SRSLIRSSHQRSPRRNCTRSRSLVSLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITC 341
S S+ R S S + T RS S++ + +R + +R ++ + S T T
Sbjct: 154 SSSVTRPSISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTS 213
Query: 342 -AMRPITPLSLT--EQTSSI*ESAVARVHR--TSTSAVWLPTRDRQQIPSRPGRRPCQ*T 506
A R TP + +SS+ ++ + R T TS L I SRP RP T
Sbjct: 214 SASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPT 273
Query: 507 RXXXXXXXXXXPSGP 551
R SGP
Sbjct: 274 RRSPSSTSLSATSGP 288
>At5g19340.1 68418.m02305 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 230 SVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVN 331
++A+ PST P +S + DLS SDG + C+N
Sbjct: 8 TMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,234
Number of Sequences: 28952
Number of extensions: 296667
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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