Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0663
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0279 + 22001589-22002237,22002909-22004044,22006050-220070...    28   5.1  
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788     27   8.9  
10_08_0255 - 16243951-16244098,16244612-16244817,16245588-162465...    27   8.9  
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843...    27   8.9  

>09_06_0279 +
           22001589-22002237,22002909-22004044,22006050-22007058,
           22007129-22007301,22007730-22008785
          Length = 1340

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -3

Query: 526 YQLNTFQIFHSTDTYFEPTIID-----VFNCTSIKLTPINFSC 413
           + ++T++   +T++Y  P  +D     V NC++ KL   N++C
Sbjct: 139 FPVSTYRFNATTNSYVVPVALDWAIRDVHNCSAAKLNATNYAC 181


>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
          Length = 1130

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 538  IKNNYQLNTFQIFHSTDTYFEPTI--IDVFNCTSIKLTPINFSCYDIFFTFYYLNGCTVA 365
            IK++ +LN+  +   +D +   T+  + + NC SIK  P N     +  +   +N   + 
Sbjct: 1029 IKDSEELNSLDVLLESD-HLPDTLEQLQLINCNSIKSLPWNMDRVLVLESLQLINCPNMQ 1087

Query: 364  KMSLTPNSLLTSR 326
             +   PN+L   R
Sbjct: 1088 FLPCLPNNLTELR 1100


>10_08_0255 -
           16243951-16244098,16244612-16244817,16245588-16246500,
           16246577-16246713
          Length = 467

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 432 PQSIFLVTIFFSHFII*MAVRLQKCR 355
           P S   VTI F+HF I +  R+ +CR
Sbjct: 281 PDSAMQVTIAFNHFGIQLVQRMPRCR 306


>10_05_0034 +
           8431753-8431790,8431940-8432063,8432726-8433038,
           8433189-8433251,8433778-8434058
          Length = 272

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 550 TDTFIKNNYQLNTFQIFHSTDTYFEPTIIDVF 455
           TD  + N  +LNT  IFH   T     I+D+F
Sbjct: 241 TDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,206
Number of Sequences: 37544
Number of extensions: 201730
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)