Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0663
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)             29   3.0  
SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)                 28   5.2  

>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
          Length = 308

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 97  LVARGFLVTALITDYIIGGCVLTH 26
           +V + F+ +A+I DY  GGC+++H
Sbjct: 153 IVPKDFINSAVINDYQPGGCIVSH 176


>SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)
          Length = 812

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 541 FIKNNYQLNTFQIFHSTDTYFEPTIIDVFNCTSIKLTPINF 419
           F  + ++L+TF+I    +TY E T +    C+ + + P+N+
Sbjct: 543 FASSEFKLHTFKIRAKMETYNEETRL---KCSVVNVVPVNY 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,143
Number of Sequences: 59808
Number of extensions: 257358
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)