Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0663
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    28   6.0  
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    28   6.0  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical
           protein T21F2.1b protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 445 SIKLTPINFSCYDIFFTFYYL 383
           S KL P+ F+ ++IF+ FYY+
Sbjct: 251 SAKLFPLLFTAFNIFYWFYYI 271


>U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical
           protein T21F2.1a protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 445 SIKLTPINFSCYDIFFTFYYL 383
           S KL P+ F+ ++IF+ FYY+
Sbjct: 470 SAKLFPLLFTAFNIFYWFYYI 490


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 457 FNCTSIKLTPINFSCYDIFFTFYYLNGCTVA 365
           F  T + +T +N SC+  +     L+ CTVA
Sbjct: 89  FGNTEVDMTLVNVSCFKTYMCNKLLDSCTVA 119


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 345 IASSPLGKYFKIIT*YN*SLILFYNPNVKDKEEKTQKNLYK 223
           I   P+GKY KI+  Y   L+ FY   V+      +KN  K
Sbjct: 137 IIEKPIGKYSKILKRYPQELLQFYVKEVEKTIANRRKNSSK 177


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 345 IASSPLGKYFKIIT*YN*SLILFYNPNVKDKEEKTQKNLYK 223
           I   P+GKY KI+  Y   L+ FY   V+      +KN  K
Sbjct: 118 IIEKPIGKYSKILKRYPQELLQFYVKEVEKTIANRRKNSSK 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,792,418
Number of Sequences: 27780
Number of extensions: 214626
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)