Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0663
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -3

Query: 532 NNYQLNTFQIFH---STDTYFEPTIIDVFNCTSIKLTPINFS-CYDIFFTFYYLNGC 374
           NNYQ N   +FH    T+ + + T+    N  S+K   +  S C   F      N C
Sbjct: 16  NNYQSNMTSVFHQLLQTEAFVDVTL--ACNEASLKAHKVVLSACSSYFQKLLLSNPC 70


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 80  FGDRTNYRLYNRRLCPDARLKR 15
           +G+     +Y RR C + RLK+
Sbjct: 225 YGNNCEIDMYMRRKCQECRLKK 246


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 80 FGDRTNYRLYNRRLCPDARLKR 15
          +G+     +Y RR C + RLK+
Sbjct: 22 YGNNCEIDMYMRRKCQECRLKK 43


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 SIND*LYYVIILKYLPRGEEAIWCKRHFCNR 373
           +IN  LY ++ +KY    ++ I CK     R
Sbjct: 322 TINPILYNLMSIKYRNAFKQTICCKTRIIGR 352


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 438 LIEVQLKTSIMVGSK*VSVEWN 503
           LIE+ LK  +M  +  V   WN
Sbjct: 70  LIEMNLKNQVMTTNVWVEQRWN 91


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 317 KYLPRGEEAIW 349
           K+ PRG++A+W
Sbjct: 91  KHNPRGKDALW 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,943
Number of Sequences: 438
Number of extensions: 2723
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)