Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0663
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   7.4  
At3g07920.1 68416.m00967 eukaryotic translation initiation facto...    27   7.4  

>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 583 IHTINETH*IKTDTFIKNNYQLNTF-QIFHSTDTYFEPTIIDVFNCTSIKLTPINFSCYD 407
           ++ +N+ + I+ +T I N     +    FH+ DT F+  +  V     +K T  N  C D
Sbjct: 289 VNLVNDVYEIEVNTIIGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWNTRCVD 348

Query: 406 I 404
           +
Sbjct: 349 V 349


>At3g07920.1 68416.m00967 eukaryotic translation initiation factor 2
           subunit 2, putative / eIF-2-beta, putative similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 169

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 451 CTSIKLTPINFSCYDIFFTFYYL 383
           C  +KL PI+FSC    F F +L
Sbjct: 145 CGKVKLYPISFSCLGQVFIFCFL 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,706
Number of Sequences: 28952
Number of extensions: 182581
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)