Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0662
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   3.1  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   3.1  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   7.2  

>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 424 RSGKSKTKTVVECLVFMLITCYVWSMFAAELYYDIR 317
           RSG S  +  +E  V+M    ++WS+F  +   D R
Sbjct: 198 RSGDSVFEDEIELSVWMQYCSFLWSVFGVQCLNDYR 233


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 451 KKIDVYQKKCAY*KKCFDKPSTYFSPNTLL 540
           +K++ ++K+C+Y +  +DKP  +   N+ L
Sbjct: 79  EKLEEFKKRCSYYRGSYDKPEDFEGLNSHL 108


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 129 NIRNKSKFKF--YVT*HSLTNLVVFCCVYFEYGNDK 28
           N   K  FK   Y+  H L  ++ +C V FE+ +++
Sbjct: 397 NTPQKGNFKLVEYMLDHVLPKVITYCVVAFEFSSEE 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,813
Number of Sequences: 5004
Number of extensions: 38290
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)