Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0662
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310...    29   3.2  
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107...    28   5.6  

>04_03_0813 -
           19929562-19929798,19930209-19930580,19930686-19931039,
           19931120-19931188,19931294-19931479,19932762-19932989,
           19933655-19934020,19934154-19934354,19934923-19935093,
           19935178-19935285,19935423-19935635,19936093-19936299,
           19936485-19936586,19936714-19936902,19937766-19937933
          Length = 1056

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 355 WSMFAAELYYDIRDLEIARMSSSSSIDANGFICQKQFGSL 236
           WS     L   IRDL  + +    S DA GF+ + +  SL
Sbjct: 151 WSKLPGALESSIRDLPPSTIGDGRSFDAKGFVAENKGKSL 190


>10_08_1007 -
           22210263-22210400,22210506-22210547,22210626-22210727,
           22212239-22212337,22212413-22212473,22213311-22213432,
           22217700-22217786,22217958-22218041,22218141-22218220,
           22218404-22218467,22218904-22218972,22219099-22219179,
           22219626-22219694,22220108-22220140
          Length = 376

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 421 SGKSKTKTVVECLVFMLITCYVWSMFAA 338
           +G S+ + +V C   MLITCY+W +  A
Sbjct: 13  TGNSEIR-LVYCKQIMLITCYIWVLVEA 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,583
Number of Sequences: 37544
Number of extensions: 191268
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)