Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0662
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine rece...    32   0.31 
U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal glan...    27   8.8  

>U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein33 protein.
          Length = 294

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = -1

Query: 571 IILFSAGLK*LKEYWVKNTLTVCQNIFFNTHIFFDIHRFFS*ITEFS-KHRSGKSKTK-- 401
           +I+F++ L     +W    L VC  I  +TH    ++RF +    FS K+      TK  
Sbjct: 64  MIIFASQLMIYCSHWAGYVLIVCYEISIHTHFLSSVNRFIAVFFPFSYKNIFSPCATKIY 123

Query: 400 -TVVECLVFMLITCYVWSMFAAELYY 326
            T +    F ++T  ++  F   L Y
Sbjct: 124 ITAIAIFSFTMMTTVIFG-FGCRLEY 148


>U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 2 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 360 TCGRCSQQNSTTTYGT 313
           TCGRCS  +ST T GT
Sbjct: 130 TCGRCSSFSSTPTTGT 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,325,440
Number of Sequences: 27780
Number of extensions: 212291
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)