Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0660
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 29 0.57
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 1.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 1.7
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 3.0
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 26 4.0
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 4.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.3
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.3
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 5.3
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.0
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 7.0
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 7.0
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 9.2
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.2
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 25 9.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 9.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.2
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 9.2
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 309 RILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETS 446
R++ + +K+++ P T DKT +P D K N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +3
Query: 261 KQAPLLDTTGRTERKSRILRTTLKKYTMRP-NTTDKTV*VHM-PTDTKLPNLRRSKIASD 434
K+ L G ++ + + LKK +RP NT+ + + PT+T PNL S+ ++
Sbjct: 124 KRIVTLQNDGGSKNTTARKQKQLKKNGLRPLNTSASRIGLSSSPTNTPSPNLPVSQPSAS 183
Query: 435 PETSPARISTRTAKTISSRYVTGQTVTVSTRKTTYLR 545
P S + +AK I R Q + ++ +LR
Sbjct: 184 PHYSGDK---NSAKGIDLRTRVIQLLAIAPETEDFLR 217
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 384 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 500
P + LP+ S I+ D ETS A + + + T +S VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 166 VLLCFFGLDVNLEDVDAGFRRRRHNCDHGENRHNT 62
+L+ F GL VNL + A HN DHG + H++
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHS 486
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 119 IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 223
ID+ +D P E AQKY+ + PFT P A LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 320 DYVEEVYDASQYHGQD-GLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLIKVR 496
+YV V + G+ G+G Y + E+ K+ R + V+ + +YK +N +
Sbjct: 291 EYVARVKATHENGGETKGIG-YRAPFSLEETRKLVLRTHTTAVSANMLYKLAQNGFHPAK 349
Query: 497 YWSDRDGFHQE--DNLPKVELKQVE 565
Y+S F E D E QVE
Sbjct: 350 YFSIDRVFRNETVDATHLAEFHQVE 374
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 344 HRILLQRSPQYSRFPFRSSSSVQEWGLL 261
HR+++Q +P Y R V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +2
Query: 269 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 448
PT+ + K + Y + Y+ ++ +D + Y + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392
Query: 449 GSYIYKDGKNDLIKVRYWSD 508
+ I G DL K+ + D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 265 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 384
R + WT + KG Y L+ + + P TRR R C
Sbjct: 59 RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 385 LRIPNSRICEGRKSRQIRRRHRLVYLQGRQKRS 483
L+ PN R +K + RRR R + LQ Q S
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 302 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 415
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 169 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWTLL 288
K P IS + +DQ++ E +S +RP+ W +L
Sbjct: 15 KSPENQSKCISRLRYMVMLDQVESDEGGNSSTRPYVWAVL 54
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 143 EPEEAQKYLNSPPFTDPQLAGRTAVLPLI--KYNDP 244
E E+ YL+S P T P+L +AV I +Y DP
Sbjct: 180 ENEDLAIYLDSSPVTQPELDQSSAVEESISTRYLDP 215
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 166 VLLCFFGLDVNLE---DVDAGFRRRRHNCDHGENRHNTQ 59
V++CF + + E D A + R++ NCD N H Q
Sbjct: 279 VIVCFTMPETHSETLLDFKARYLRKKTNCDKWYNEHEHQ 317
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 308 ENTEDYVEEVYDASQYHGQDGLGAYAYG 391
++TEDYV ++Y+AS + +AYG
Sbjct: 175 QSTEDYVYDIYEASS--KEPNKPTFAYG 200
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 119 IDVFQIDIEPEEAQKYLNSPPF 184
+D F +++ P+EA KYL S F
Sbjct: 599 VDEFGVELGPKEAYKYLLSHQF 620
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 331 RSIRCVPIPRTRRSRCICLRIPNSRI---CEGRKSRQIRRRHRLVYLQGRQKRS 483
R + + R+ + +R+PN RI C+G S I+R RL L R+ +S
Sbjct: 836 RILNIIEFTSKRKCMSVIVRMPNGRICLFCKGADSAIIKRL-RLSNLAKRKDKS 888
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 319 LSILDFLSVLPVVSKSGAC--FNCA 251
L +LDFL P +S+ G C NCA
Sbjct: 36 LRLLDFLEYYPGLSEIGCCNELNCA 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,687
Number of Sequences: 5004
Number of extensions: 53974
Number of successful extensions: 191
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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