Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0660
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 39 0.003
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 33 0.17
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 30 1.6
AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math... 30 1.6
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 28 6.5
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 8.6
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +3
Query: 282 TTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARIS 461
TT T + TT T P TT PT T + + + P T+P +
Sbjct: 225 TTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTT 284
Query: 462 TRTAKTISSRYVTGQTVTVSTRKTT 536
T T T +++ T T T KTT
Sbjct: 285 TPTTTTTTAKTTKSTTTTTKTTKTT 309
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 261 KQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPE 440
K+ LLD + +KS ++ TT KK + K + +P+ AS P+
Sbjct: 11 KKTSLLDPS---PKKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPK 64
Query: 441 TSPARISTRTAKTISSRYVTGQTVTVST---RKTTYLRS 548
TSPA+ +T T ++ + T +ST RK T +S
Sbjct: 65 TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 263 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 433
+G T+ N + N +Y+++ D Q + G + Y + ++ +PE++K +EN +
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361
Query: 434 SGDVTGSYIYKDGKNDLIKVRYWSDRD 514
K NDL+KV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378
>AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math
domain containingprotein 5 protein.
Length = 305
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 272 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 412
TL H +KN ++E+ ED+ ++ S H ++ LG Y Y Y++ ESA
Sbjct: 9 TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Frame = +3
Query: 231 NTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNL 410
+TTT L LL T T S T + P+TT T T + +
Sbjct: 287 STTTSSSTMLSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTPMEQSSTVSSVQKT 346
Query: 411 RRSK-IASDPETSPARISTRTAKTISSRYVTGQTVTVS 521
R S+ S T P ST + T S T + T S
Sbjct: 347 RTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTS 384
>U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical
protein B0361.11 protein.
Length = 534
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 384 PTDTK-LPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTTY 539
P++T L RRSK +S ++ ++ S R+ KT+SS V+ + TV+ Y
Sbjct: 480 PSETNDLSAYRRSKSSSSSVSALSKTSVRSKKTLSSESVSKKLDTVNFSDKEY 532
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 337 IRCVPIPRTRRSRCICLRIPNSRI 408
+RC+ R RRSR +C+ + R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +2
Query: 203 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 382
GR ++ IK D RF+ G GH G ++ Y D+ HG + G
Sbjct: 88 GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147
Query: 383 AYGYQT 400
Y T
Sbjct: 148 VEQYHT 153
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 520 PPGRQLT*GRAETSRRGSRCEGCTYCSRKSMARSCCRCC 636
PP + + S+R SR E CT+ + CC+ C
Sbjct: 90 PPADEPCPDESRWSKRCSRDEDCTHQEELCIEGKCCKTC 128
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 393 TKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVST 524
T+LP + + +P T+ A +ST TA+ + + + + ST
Sbjct: 906 TELPKISSTLSFGNPTTAAAPVSTATAEAVKTNVFGSNSASAST 949
>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
protein F54C4.3 protein.
Length = 1145
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +2
Query: 128 FQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEI 307
F +E EE ++ + PF +PQ ++ Y+D V +GH E+
Sbjct: 756 FYTTVEDEEGEEAEHENPFKNPQ---------ILMYDDDGDEVVVEEEIIGHEIDGASEL 806
Query: 308 ENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 433
+ +E EEV Y + Y Y E K+ + +R
Sbjct: 807 QGSELPDEEVI----YETYEDYPEYGGHYDLEEEHKMHHNMR 844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,980
Number of Sequences: 27780
Number of extensions: 318740
Number of successful extensions: 1155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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