Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0660
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51920.1 68414.m05853 expressed protein 30 1.1
At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta... 29 3.4
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 28 4.5
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin... 28 4.5
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si... 28 6.0
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 28 6.0
At1g19220.1 68414.m02392 transcriptional factor B3 family protei... 28 6.0
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati... 27 7.9
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 27 7.9
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 547 RAETSRRGSRCEGCTYCSRKSMARSCCRCC 636
RA S R C C C + SCCRCC
Sbjct: 35 RAPISSRRPICPACVCCEPAPLG-SCCRCC 63
>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
domain-containing protein contains Pfam PF00226: DnaJ
domain; similar to dnaJ (GI:144832) [Clostridium
acetobutylicum]
Length = 207
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 282 CPRVGPASTVRNLGSLYLINGKTAVR 205
CP G S + N+ S +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = +2
Query: 347 SQYHGQDGLGAYAYGYQTPES-AKVENRVRSGDVTGSY---IYK--DGKNDLIKVRYWSD 508
SQ G+ GL AY P + A E + + T I K DGK + +
Sbjct: 120 SQIKGEIGLKAYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEK 179
Query: 509 RDGFHQEDNLPKVELKQVEEAPD 577
++G +E+ PK E K E+ PD
Sbjct: 180 KEGDKKEEEKPKEEAKPDEKKPD 202
>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
protein contains Pfam PF00403: Heavy-metal-associated
domain; similar to copper homeostasis factor (CCH)
(ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
thaliana]
Length = 259
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 414 RSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTT 536
R + SDP++ + AKT+ + G+ T++ +KTT
Sbjct: 134 RYLLGSDPDSITGSVDQDPAKTVEAEAPAGEDKTLTEKKTT 174
>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
similar to fructan 1-exohydrolase IIa GI:13940209 from
[Cichorium intybus]; contains Pfam profile PF00251:
Glycosyl hydrolases family 32
Length = 550
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 377 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 514
+Y G +T +++V ++ G+ Y++ DG+N +I + WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 418 RKSRQIRRRHRLVYLQGRQKRSHQ 489
R S + + RHRL+ +G QK +HQ
Sbjct: 201 RLSAENKTRHRLIQQKGHQKENHQ 224
>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 1086
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 122 DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 268
D I I A NS PFT +P+ + V+PL KYN + V G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293
>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
similar to protein-serine/threonine kinase [Nicotiana
tabacum] gi|505146|dbj|BAA06538
Length = 434
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -3
Query: 413 SQIREFGIRRHMHLDRLVRGI-GTHRILLQRSPQY-SRFPFRSSSSVQEWGLLQL 255
+++ +FG+ + M LDR+ G+ GTH + P Y S + S + +G++ L
Sbjct: 251 AKVADFGLSKEMVLDRMTSGLKGTHGYM---DPTYISTNKYTMKSDIYSFGVIIL 302
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 404 ESAKVENRVRSGDVTGSYIYKDGKNDLIKVRYWSDRDGFHQEDNLP 541
ESA++++ + G G Y+ G N+L + Y D F +DN P
Sbjct: 617 ESAEIKDNLAVGIPEGEYMDLSGTNELARCAY---NDVFTGQDNQP 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,832
Number of Sequences: 28952
Number of extensions: 298440
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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