Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0659
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   3.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 99  ISVIDHRKHFGKYSQQPFLQAHEMLYFLSAFS 4
           +S  DH   FGK    P   +  M Y +S +S
Sbjct: 64  VSRADHSPVFGKVEPVPHTSSFNMGYLVSPYS 95


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 154 CCNATVERRHVTDVLYVVDL 95
           C N   ERRH+   + VV L
Sbjct: 60  CINQRCERRHIKGAIPVVSL 79


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 STIKAAVKIYKSQALQNGN 218
           +++ AA K+Y S+  QN N
Sbjct: 70  ASVAAACKLYSSEGQQNSN 88


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 FIFHCHYDLNMVQ*VKTQIIH 351
           F+FH    +N++  V TQ+I+
Sbjct: 673 FLFHIVIGMNLIIHVGTQLIY 693


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,437
Number of Sequences: 336
Number of extensions: 3242
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)