Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0659
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          30   1.5  
SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)                    29   4.5  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_24194| Best HMM Match : RyR (HMM E-Value=5)                         29   4.5  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.0  

>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 303 LYDKINPEQLTVDSHFMNDLGLDSLDHVE 389
           L+ +I    +T D H  ND+ LDS+DH +
Sbjct: 636 LHRQIAASGMTRDEHAQNDVALDSIDHTQ 664


>SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)
          Length = 206

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 167 N*SRCQNIQKSGPSEWERETWY 232
           N SR  NIQ SG  E E ETWY
Sbjct: 107 NQSRRNNIQVSGIEESEGETWY 128


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91   YGDQQRIERP*HVV-FRPLRCSKSSAQLKPLSKYTKVRPFRMG-TRNMVSASTAVALPSP 264
            YG QQ I  P  ++ ++P++ S S+  +KP    T   P +   + N +  S +    +P
Sbjct: 1237 YGRQQHIGSPSSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTP 1296


>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
          Length = 211

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 167 N*SRCQNIQKSGPSEWERETWY 232
           N SR  NIQ SG  E E ETWY
Sbjct: 107 NQSRRNNIQVSGIEESEGETWY 128


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 160 NFCCNATVERRHVTDVLYVVDLRNRP 83
           N+ C AT +R  VT ++ V+D++ +P
Sbjct: 243 NYTCTATNDRGSVTSIVGVIDMKFKP 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,899
Number of Sequences: 59808
Number of extensions: 381188
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)