Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0659
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65290.1 68414.m07403 acyl carrier family protein / ACP famil... 79 3e-15
At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / A... 75 4e-14
At5g47630.1 68418.m05880 acyl carrier family protein / ACP famil... 70 2e-12
At4g25050.1 68417.m03594 acyl carrier family protein / ACP famil... 42 4e-04
At3g05020.1 68416.m00545 acyl carrier protein 1, chloroplast (AC... 41 7e-04
At1g54630.1 68414.m06230 acyl carrier protein 3, chloroplast (AC... 41 7e-04
At1g54580.1 68414.m06225 acyl carrier protein, chloroplast, puta... 39 0.003
At5g27200.1 68418.m03245 acyl carrier protein, chloroplast, puta... 38 0.006
At1g20730.1 68414.m02597 expressed protein contains TIGRFAM TIGR... 28 4.9
At5g47590.1 68418.m05874 heat shock protein-related contains sim... 27 8.6
At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof... 27 8.6
At3g12540.1 68416.m01560 expressed protein contains Pfam profile... 27 8.6
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb... 27 8.6
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb... 27 8.6
>At1g65290.1 68414.m07403 acyl carrier family protein / ACP family
protein similar to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; contains InterPro accession IPR003881:
Isochorismatase
Length = 126
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/71 (49%), Positives = 53/71 (74%)
Frame = +3
Query: 273 IKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 452
+ RVL V++ + K++P ++T ++F NDLGLDSLD VEV+MA+E+EFGFEIPD +A+++
Sbjct: 50 VTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKI 109
Query: 453 VRPKDIVQYIA 485
V +IA
Sbjct: 110 QSIDLAVDFIA 120
>At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / ACP
/ NADH-ubiquinone oxidoreductase 9.6 kDa subunit
identical to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; identical to cDNA acyl carrier protein
precursor GI:468265
Length = 122
Score = 74.9 bits (176), Expect = 4e-14
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 231 IRKYSGGPP-LTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAME 407
IR +S L+ + + RVL V++ + K++P ++T + HF NDLGLDSLD VE++MA+E
Sbjct: 31 IRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIE 90
Query: 408 DEFGFEIPDGDAERLVRPKDIVQYI 482
+EF EIPD +A+++ ++Y+
Sbjct: 91 EEFKLEIPDKEADKIDSCSLAIEYV 115
>At5g47630.1 68418.m05880 acyl carrier family protein / ACP family
protein similar to acyl carrier protein, mitochondrial
precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa
subunit) from {Arabidopsis thaliana} SP|P53665,
{Neurospora crassa} SP|P11943; contains Pfam profile
PF00550: Phosphopantetheine attachment site
Length = 131
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +3
Query: 267 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 446
D I SRV+ +++ YDK N ++T + F DL LDSLD E++MA+E+EF EIPD A+
Sbjct: 49 DQILSRVIELVKKYDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKAD 108
Query: 447 RLVRPKDIVQYI 482
+L D+ YI
Sbjct: 109 KLTCCGDVATYI 120
>At4g25050.1 68417.m03594 acyl carrier family protein / ACP family
protein similar to Acyl carrier protein, chloroplast
precursor from {Spinacia oleracea} SP|P23235, {Casuarina
glauca} SP|P93092; contains InterPro accession
IPR003881: Isochorismatase
Length = 137
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +3
Query: 330 LTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 482
LT +S F + LG DSLD VE++MA+E++F + + DA+ + ++ I
Sbjct: 75 LTAESKF-SALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLI 124
>At3g05020.1 68416.m00545 acyl carrier protein 1, chloroplast
(ACP-1) identical to SP|P11829 Acyl carrier protein 1,
chloroplast precursor (ACP) {Arabidopsis thaliana}
Length = 137
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +3
Query: 282 RVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRP 461
+V +++ + P++ V DLG DSLD VE++M +E+EF ++ + A+++
Sbjct: 63 KVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATV 122
Query: 462 KDIVQYI 482
+ + I
Sbjct: 123 EQAAELI 129
>At1g54630.1 68414.m06230 acyl carrier protein 3, chloroplast
(ACP-3) nearly identical to SP|P25702 Acyl carrier
protein 3, chloroplast precursor (ACP) {Arabidopsis
thaliana}
Length = 136
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +3
Query: 240 YSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFG 419
Y P T+D + + V L L + +++T + F LG DSLD VE++M +E+EFG
Sbjct: 51 YCAAKPETVDKVCAVVRKQLSLKEA---DEITAATKFAA-LGADSLDTVEIVMGLEEEFG 106
Query: 420 FEIPDGDAERL 452
E+ + A+ +
Sbjct: 107 IEMAEEKAQSI 117
>At1g54580.1 68414.m06225 acyl carrier protein, chloroplast,
putative / ACP, putative strong similarity to SP|P25701
Acyl carrier protein 2, chloroplast precursor (ACP)
{Arabidopsis thaliana}; contains InterPro accession
IPR003881: Isochorismatase
Length = 136
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +3
Query: 255 PLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPD 434
P T+D + + V L L + +++T + F LG DSLD VE++M +E+EFG E+ +
Sbjct: 56 PETVDKVCAVVRKQLSLKEA---DEITAATKFAA-LGADSLDTVEIVMGLEEEFGIEMAE 111
Query: 435 GDAERL 452
A+ +
Sbjct: 112 EKAQSI 117
>At5g27200.1 68418.m03245 acyl carrier protein, chloroplast,
putative / ACP, putative similar to Acyl carrier
protein, chloroplast precursor (ACP) from {Arabidopsis
thaliana} SP|P11829, {Brassica napus} SP|P17650;
contains InterPro accession IPR003881: Isochorismatase
Length = 139
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 324 EQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 482
+++T + F +LG DSLD VE++M +E+EFG + + A+ + + + I
Sbjct: 79 QKVTAGTKF-TELGADSLDTVEIVMGLEEEFGITMAEERAKEIATVQQAAELI 130
>At1g20730.1 68414.m02597 expressed protein contains TIGRFAM
TIGR01640 : F-box protein interaction domain
Length = 567
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 393 IMAMEDEFGFEIPDGDAERL 452
I+ ME +GFEI DGD+ RL
Sbjct: 348 ILEMETVYGFEISDGDSWRL 367
>At5g47590.1 68418.m05874 heat shock protein-related contains
similarity to mitochondrial small heat shock protein
[Lycopersicon esculentum] gi|3492854|dbj|BAA32547
Length = 264
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 144 ALQQKFSTIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLD 269
A++ + ++ V + + L NG E G+R+YSG L D
Sbjct: 60 AVRYRVDAVRQKVVFFSGETLNNGKE--GVRQYSGTAGLGCD 99
>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
profile: PF01657 domain of unknown function
Length = 286
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 21 NKAFRELEEMAAANIFRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFS 164
N+A E + F + G R+TTY T++ LST++ Q F+
Sbjct: 18 NQAISESDSDEHMATFCNDSSGNFTRNTTYNTNLNTLLSTLSNQSSFA 65
>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 503
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +3
Query: 252 PPLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 431
P L+L L+ +V +++ + E L ++ + DL LD + +ED I
Sbjct: 27 PRLSLLLLPPQVQELIEELATVEAEILCLEKR-IQDLKLDVYSEKKENKELEDS----ID 81
Query: 432 DGDAERLVRPKDIVQ 476
+G+ ER++ PK ++Q
Sbjct: 82 EGEEERMMNPKRLLQ 96
>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 140
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 136 RPLRCSKSSAQLKPLSKYTKVRPFRMG 216
+P S+SS Q+KP+ + K+RP + G
Sbjct: 46 QPKPMSESSEQVKPIDEKDKLRPIKTG 72
>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 145
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 136 RPLRCSKSSAQLKPLSKYTKVRPFRMG 216
+P S+SS Q+KP+ + K+RP + G
Sbjct: 46 QPKPMSESSEQVKPIDEKDKLRPIKTG 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,684
Number of Sequences: 28952
Number of extensions: 262638
Number of successful extensions: 626
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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