Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0658
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...   237   8e-64
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...   201   6e-53
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   4.1  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   4.1  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   5.5  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   7.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.2  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  237 bits (581), Expect = 8e-64
 Identities = 103/191 (53%), Positives = 134/191 (70%)
 Frame = +3

Query: 60  SSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXX 239
           S +   W+ WF  L+GNEFFCEVDED+I D+FNLTGL+ +VPHY ++LD+          
Sbjct: 10  SDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69

Query: 240 XXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPI 419
                E   VE ++  LYGLIHARYILT +G+ +ML+K++  DFG+CPRV C  QPMLP+
Sbjct: 70  EEVQDE---VEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPV 126

Query: 420 GLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPASQ 599
           GLSD+     VKLYCPRC DVYTPKS RH   DGAYFGT FPHM+F V+P+    +   +
Sbjct: 127 GLSDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQER 186

Query: 600 FVPRLYGFKIH 632
           ++PR++GFK+H
Sbjct: 187 YIPRIFGFKVH 197


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score =  201 bits (491), Expect = 6e-53
 Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 3/195 (1%)
 Frame = +3

Query: 66  EEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXXXX 245
           E VSWI+WFC+  G E+F EV ED+I D FNLTGLN  VP Y EALD+            
Sbjct: 37  ENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAPDTLEN 96

Query: 246 XXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGL 425
              + D++E +++ILYGLIH RYI+T  G+ QM +K+  G FG CPRV C    +LP GL
Sbjct: 97  F--DMDVIETSAQILYGLIHQRYIITRTGLHQMAEKYSMGIFGCCPRVNCCYTHVLPAGL 154

Query: 426 SDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKR--PASQ 599
           SD+  +  V L+CP C+D+Y P SSR+ + DG++FG  FPH+ F  +P+  PKR  P  +
Sbjct: 155 SDIVGKMPVMLFCPNCLDLYAPSSSRYKNIDGSFFGATFPHLFFESYPELNPKRSIPCGK 214

Query: 600 -FVPRLYGFKIHPLA 641
            + PR+YGFK+  L+
Sbjct: 215 IYQPRIYGFKVSELS 229


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 382 GQYPKSPDWNLSNI*LMPLLVNMYRACI 299
           G+ P S   N S   L P L N+Y+AC+
Sbjct: 199 GKRPSSLQSNFSQFPLNPWLDNIYKACL 226


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 437 GDVRQTNWQHRLAFTVYTW 381
           GDV ++ WQ+  +FT+  W
Sbjct: 76  GDVDESGWQYGFSFTMNNW 94


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 379 AHVYTVNANLCCQLVCRTSPPKRW*SCT 462
           A+V+    N   +    TSPP+RW +CT
Sbjct: 8   ANVHFEGQNQSSEGQLSTSPPRRWRNCT 35


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -3

Query: 228 LAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRQPH 121
           +AP+PES      P P    +  H+  L  + HLC LR+ +
Sbjct: 17  VAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDY 57


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 99  LRGNEFFCEVDEDYINDKFNLTGLNEQVPHYRE 197
           ++ N +F  +D+D I+DK +L   N+ + H  E
Sbjct: 165 IQENPYFNNIDQDSISDK-SLPSTNQSLHHSEE 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,175
Number of Sequences: 5004
Number of extensions: 58868
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)