Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0658
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677...   243   8e-65
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923...   143   9e-35
02_01_0139 - 1008675-1008752,1008828-1008905,1009176-1009227,100...    28   5.6  
09_02_0612 + 11239675-11240140,11240587-11240687                       27   9.9  
07_03_1139 + 24254662-24255306                                         27   9.9  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    27   9.9  

>07_03_0465 +
           18465966-18466206,18467424-18467443,18467444-18467729,
           18468557-18468666,18468744-18468909,18469303-18469433
          Length = 317

 Score =  243 bits (595), Expect = 8e-65
 Identities = 101/192 (52%), Positives = 141/192 (73%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  E+ SWI+W+C+LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 124 SDGEDHSWISWYCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHG 183

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 +++LVE A+E+LYGLIHARYILT++G++ ML+K+++ DFG CPRVYC  QP LP
Sbjct: 184 DMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGRCPRVYCCGQPCLP 243

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+   + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++P+ 
Sbjct: 244 VGQSDIHRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEHLKPQKPSQ 303

Query: 597 QFVPRLYGFKIH 632
           ++VPR++GFK+H
Sbjct: 304 RYVPRVFGFKLH 315


>10_08_0955 +
           21789616-21789778,21791622-21791688,21792285-21792346,
           21792508-21792729,21792993-21793102,21793195-21793236,
           21793271-21793303
          Length = 232

 Score =  143 bits (347), Expect = 9e-35
 Identities = 60/110 (54%), Positives = 82/110 (74%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  E+ SWI+WFC+LRGNEFFCE+D+DYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 113 SEGEDTSWISWFCSLRGNEFFCEIDDDYIQDDFNLCGLSNQVPYYDYALDLILDIESSNG 172

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPR 386
                 +++L+E ++E+LYGLIHARYILT++G++ ML+KF++ DFG CPR
Sbjct: 173 DVFTEEQNELIESSAEMLYGLIHARYILTSKGLAAMLEKFKNYDFGRCPR 222


>02_01_0139 -
           1008675-1008752,1008828-1008905,1009176-1009227,
           1009369-1009437,1009594-1009652,1009757-1009828,
           1009945-1010038,1010311-1010356,1010510-1010609,
           1010847-1011200,1011362-1011460,1011548-1011595,
           1011679-1011816
          Length = 428

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 270 PPDQIHL-DCLQCHHLAPD 217
           PP+  HL D LQ HHLAPD
Sbjct: 14  PPEVAHLVDQLQRHHLAPD 32


>09_02_0612 + 11239675-11240140,11240587-11240687
          Length = 188

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 375 YCPRVYCECQPMLPIGLSDVPAEA 446
           + P+  C CQP +  G++  PAEA
Sbjct: 122 WAPQRRCPCQPCVRAGVAQCPAEA 145


>07_03_1139 + 24254662-24255306
          Length = 214

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
 Frame = -3

Query: 465 GSTASPSLRRGRPTNQLAA*VGIHSIHVGNIQNPQTGTYPTFD*CPYWSICTGHVSIHIV 286
           G+T +P++RR R   ++AA   +H    G   +    T P        ++ + H S  + 
Sbjct: 90  GATRTPAIRRPRTGARIAAPAALH----GRASHLVAMTPPPHKPPDAAAVASSHDSSALC 145

Query: 285 SPMLVPPDQIHLDCLQCHHLAP---DPESCPAP 196
            P   PP           HL P   DP   P P
Sbjct: 146 CPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLP 178


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 406  GWHSQYTRGQYPKSPDWNLSN 344
            GWH+QY+ GQ P S + + S+
Sbjct: 1320 GWHAQYSPGQAPPSSEMSGSH 1340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,792,015
Number of Sequences: 37544
Number of extensions: 422800
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)