Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0658
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...   337   4e-93
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...   333   7e-92
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...   329   9e-91
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    28   6.7  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    28   6.7  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      28   6.7  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen pro...    27   8.8  

>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score =  337 bits (828), Expect = 4e-93
 Identities = 148/197 (75%), Positives = 166/197 (84%)
 Frame = +3

Query: 54  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 233
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPED 60

Query: 234 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 413
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 120

Query: 414 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 593
           PIGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 121 PIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 180

Query: 594 SQFVPRLYGFKIHPLAY 644
           +QFVP+LYGFKIHP+AY
Sbjct: 181 TQFVPKLYGFKIHPVAY 197


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score =  333 bits (818), Expect = 7e-92
 Identities = 148/197 (75%), Positives = 166/197 (84%)
 Frame = +3

Query: 54  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 233
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 234 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 413
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  IEDNAT-NTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 119

Query: 414 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 593
           PIGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 120 PIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 179

Query: 594 SQFVPRLYGFKIHPLAY 644
           +QFVP+LYGFKIHP+AY
Sbjct: 180 TQFVPKLYGFKIHPVAY 196


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score =  329 bits (809), Expect = 9e-91
 Identities = 147/197 (74%), Positives = 165/197 (83%)
 Frame = +3

Query: 54  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 233
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 234 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 413
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  IEDNAT-NTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 119

Query: 414 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 593
           PIGLSDVP EAMVKLYCPRC  V+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 120 PIGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 179

Query: 594 SQFVPRLYGFKIHPLAY 644
           +QFVP+LYGFKIHP+AY
Sbjct: 180 TQFVPKLYGFKIHPVAY 196


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 63  SEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHY 191
           +E++ +  +     GNE F    +  + DKFN+   N+Q+P +
Sbjct: 176 AEQMFYFGYGSPRCGNEDFAYYVDSSLADKFNIVWFNDQIPEF 218


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 477 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 349
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 477 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 349
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 477 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 349
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 61  LLIFLLFYVFKAVFHNFTVN 2
           LL+FL+F +F A+F+ + V+
Sbjct: 296 LLLFLMFIIFNAIFNRYAVS 315


>AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen
           protein 116 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 390 YCECQPMLPIGLSDVPAE 443
           YC+C P  PIG +D  +E
Sbjct: 286 YCQCPPRTPIGSADADSE 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,979
Number of Sequences: 27780
Number of extensions: 344054
Number of successful extensions: 918
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)