Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0658
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 105  GNEFFCEVDEDYINDKFNLTGLNEQVP 185
            G ++ C+V+    NDK + T L  QVP
Sbjct: 1379 GGDYTCQVENAQGNDKLHYT-LTVQVP 1404


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 105  GNEFFCEVDEDYINDKFNLTGLNEQVP 185
            G ++ C+V+    NDK + T L  QVP
Sbjct: 1375 GGDYTCQVENAQGNDKLHYT-LTVQVP 1400


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 318 LTNRGISQMLDKFQSGDF 371
           L  R      DKF+SGDF
Sbjct: 38  LKERQCQNWFDKFRSGDF 55


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 443 FGGDVRQTNWQHRLAFTVYTW 381
           + G   Q  WQ ++ F   TW
Sbjct: 357 WSGFCSQCIWQEKIVFAAVTW 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,253
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)