Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0658
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44680.1 68415.m05560 casein kinase II beta chain, putative s...   239   9e-64
At4g17640.1 68417.m02637 casein kinase II beta chain, putative s...   239   1e-63
At5g47080.1 68418.m05802 casein kinase II beta chain, putative s...   239   2e-63
At2g44680.2 68415.m05561 casein kinase II beta chain, putative s...   237   4e-63
At3g60250.1 68416.m06734 casein kinase II beta chain, putative (...   231   3e-61
At5g47080.2 68418.m05803 casein kinase II beta chain, putative s...   195   2e-50
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    31   0.67 
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    30   1.5  
At1g20530.1 68414.m02558 hypothetical protein                          29   3.6  
At3g10116.1 68416.m01213 hypothetical protein                          28   4.7  
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2...    28   6.2  
At1g74440.1 68414.m08624 expressed protein similar to YGL010w-li...    27   8.2  

>At2g44680.1 68415.m05560 casein kinase II beta chain, putative
           similar to casein kinase II beta-3 chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:O81275
          Length = 283

 Score =  239 bits (586), Expect = 9e-64
 Identities = 98/192 (51%), Positives = 137/192 (71%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 89  SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 + ++VE A+E+LYGLIH RYILT +G++ M++K+++ DFG CPRV+C  Q  LP
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLP 208

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+P  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M + + +P++PA 
Sbjct: 209 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQ 268

Query: 597 QFVPRLYGFKIH 632
            +VP+++GFK+H
Sbjct: 269 NYVPKIFGFKVH 280


>At4g17640.1 68417.m02637 casein kinase II beta chain, putative
           similar to casein kinase II beta' chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:P40229
          Length = 282

 Score =  239 bits (585), Expect = 1e-63
 Identities = 99/192 (51%), Positives = 137/192 (71%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 89  SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHG 148

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 +++L+E A+E+LYG+IHAR+ILT++G++ MLDK+++ DFG CPRVYC  QP LP
Sbjct: 149 EMFTEEQNELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLP 208

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+P  + VK+YCP+C DVY P+S    + DGAYFGT FPH+  M +   +P++ + 
Sbjct: 209 VGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQ 268

Query: 597 QFVPRLYGFKIH 632
            +  R++GFK+H
Sbjct: 269 SYTQRVFGFKLH 280


>At5g47080.1 68418.m05802 casein kinase II beta chain, putative
           similar to casein kinase II beta chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:P40228
          Length = 287

 Score =  239 bits (584), Expect = 2e-63
 Identities = 100/192 (52%), Positives = 135/192 (70%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+  VP+Y  ALD+         
Sbjct: 94  SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 +++L+E A+E+LYGLIHARYILT++G++ MLDK+++ DFG CPRVYC  QP LP
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLP 213

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+P  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P +   
Sbjct: 214 VGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQ 273

Query: 597 QFVPRLYGFKIH 632
            +V R++GFK+H
Sbjct: 274 NYVQRVFGFKLH 285


>At2g44680.2 68415.m05561 casein kinase II beta chain, putative
           similar to casein kinase II beta-3 chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:O81275
          Length = 282

 Score =  237 bits (581), Expect = 4e-63
 Identities = 98/192 (51%), Positives = 138/192 (71%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 89  SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 + ++VE A+E+LYGLIH RYILT +G++ M++K+++ DFG CPRV+C  Q  LP
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLP 208

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+P  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M + + +P++PA 
Sbjct: 209 VGQSDIPRSSTVKIYCPKCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMAYGNMKPQKPAQ 267

Query: 597 QFVPRLYGFKIH 632
            +VP+++GFK+H
Sbjct: 268 NYVPKIFGFKVH 279


>At3g60250.1 68416.m06734 casein kinase II beta chain, putative
           (CKB3) similar to casein kinase II beta-3 chain (CK II)
           [Arabidopsis thaliana SWISS-PROT:O81275
          Length = 276

 Score =  231 bits (565), Expect = 3e-61
 Identities = 95/192 (49%), Positives = 134/192 (69%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  ++ SWI+WFC LRGN+FFCEVDEDYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 83  SEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNS 142

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 + ++VE A+E+LYGLIH RYILT +G++ M +K+++ DFG CPRV+C  Q  LP
Sbjct: 143 EMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLP 202

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 596
           +G SD+P  + VK+YCP+C D+  P+S    + DGAYFGT FPH+  M + + +P++P  
Sbjct: 203 VGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQ 262

Query: 597 QFVPRLYGFKIH 632
            +VP+++GFK+H
Sbjct: 263 SYVPKIFGFKVH 274


>At5g47080.2 68418.m05803 casein kinase II beta chain, putative
           similar to casein kinase II beta chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:P40228
          Length = 256

 Score =  195 bits (475), Expect = 2e-50
 Identities = 82/147 (55%), Positives = 108/147 (73%)
 Frame = +3

Query: 57  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 236
           S  E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+  VP+Y  ALD+         
Sbjct: 94  SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153

Query: 237 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 416
                 +++L+E A+E+LYGLIHARYILT++G++ MLDK+++ DFG CPRVYC  QP LP
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLP 213

Query: 417 IGLSDVPAEAMVKLYCPRCMDVYTPKS 497
           +G SD+P  + VK+YCP+C D+Y P+S
Sbjct: 214 VGQSDLPRSSTVKIYCPKCEDIYYPRS 240


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 315 CTGHVSIHI-VSPMLVPPDQIHLDCLQCHHLAPDPESCPAPLYNVELAHLSRLD*IYH 145
           CT  VS +   S   VP   +H     C H A +  +C APLY+VE  H+  ++ + H
Sbjct: 51  CTVMVSSYDRESKTCVPSYTVHTGNFYCRHYAVN--ACLAPLYSVEGMHVISIEGVGH 106


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 255 HLDCLQC--HHLAPDPESCPAPLYNVELAH 172
           H+ C QC   ++  D ++CPAP    +LAH
Sbjct: 696 HIFCYQCVSDYITGDEDTCPAPRCREQLAH 725


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 284 LRCLFHQIRFIWIVFNVI----IWLQIQNHVQRLSIMWNLLI 171
           +R   H+I  I +  N +    +W Q++  + RLS MWN ++
Sbjct: 370 MRVSIHKINNICLTINKLRDEELWFQMKELIHRLSEMWNSML 411


>At3g10116.1 68416.m01213 hypothetical protein
          Length = 170

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 178 KFHIIERRWT*FWIWSQMMTLKTI 249
           K+H IE  W   WIW   + L T+
Sbjct: 19  KYHDIEGPWVLDWIWEDQILLSTV 42


>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
           HD-ZIP protein 2 identical to homeobox-leucine zipper
           protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
           SP:P46601; contains Pfam profiles PF04618: HD-ZIP
           protein N terminus, PF02183: Homeobox associated leucine
           zipper,  PF00046: Homeobox domain
          Length = 283

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 456 LYCPRCMDVYTPKSSRHHH 512
           + CP C  V  P SS HHH
Sbjct: 235 IMCPSCERVGGPSSSNHHH 253


>At1g74440.1 68414.m08624 expressed protein similar to YGL010w-like
           protein GB:AAC32136 [Picea mariana]
          Length = 208

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 343 CWISSSLGILDIAHVYTVNANLCCQLVCRT 432
           CWI SS     + H  T+   +  QL+C T
Sbjct: 103 CWIGSSFLAARLGHSLTLKVGVASQLLCWT 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,756
Number of Sequences: 28952
Number of extensions: 321114
Number of successful extensions: 884
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)