Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0657
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.014
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    30   0.23 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.53 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    28   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   3.8  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    25   6.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = -2

Query: 325  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSPPP 152
            P+ G  P P PST   P P+ S   PP  +         AP S  PSV++ R   P P
Sbjct: 1203 PSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259



 Score = 31.5 bits (68), Expect = 0.076
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = -2

Query: 328  LPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAP------RSLYPSVASIRG 167
            LP+A   P P+PST   PP       PP  + + S+G   AP       S  PS+ +  G
Sbjct: 1026 LPSADAPPIPVPST--APPVPIPTSTPP--VPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081

Query: 166  LSPPPGVAGSTDVYCPYI 113
              P P  +G   V  P +
Sbjct: 1082 APPVPAPSGIPPVPKPSV 1099



 Score = 31.1 bits (67), Expect = 0.10
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 325  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSP 158
            P+AG  P P+P+    P P+ S++ P  +  R S     +  S  P+ +S+   +P
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAP 1277



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = -2

Query: 325  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSP 158
            P +   P P PS    P P  +   PP             PRS  PS  S    SP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSP 1267


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 338 QPLSAHCWT*AFPNAFHIMRSSAFRIQRLPAVR-TKSSVHRVGGRPTLLVPIRGLHSRTF 162
           +P S  C    FPN    ++   +  Q L   R TK    R   + T++  ++GL     
Sbjct: 53  RPWSISCLVYGFPNKVSALKFE-WNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVD 111

Query: 161 PPTWRRW 141
             TWRRW
Sbjct: 112 SDTWRRW 118


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 337 SLYLPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSP 158
           S  +P  G+  +P+  T   P  ++S   PP   S  STG   +P  L  S +     S 
Sbjct: 342 STSIPPTGNSTTPVTPT-VPPTSTSSTSTPPPPASTSSTGTSSSP-LLSTSTSCTTSTSI 399

Query: 157 PPGVAGSTDV 128
           PP    +T V
Sbjct: 400 PPTGNSTTPV 409



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -2

Query: 337 SLYLPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSP 158
           S  +P  G+  +P+  T   P  ++S   PP   S  STG   +P     +  +     P
Sbjct: 288 STSIPPTGNSTTPVTPT-VPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 157 PPG 149
           P G
Sbjct: 347 PTG 349


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 108 YCVYRLRTIITNQSSRNRSMKLNNSETV 25
           YC+ + + ++T Q +RNRS  + N   V
Sbjct: 466 YCIDKQKPLLTTQRTRNRSHTIGNQAVV 493


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 277 PPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIRGLSPPPGVAG 140
           PP   S   PP   S  STG +  P S   +V++    +PPP + G
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP--APPPAIPG 397


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 211 PPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADK 333
           P   W DD+  T  + W RK  D I  +      V +W  K
Sbjct: 496 PRREWGDDIPTTKEAFWYRKLFDEIFPRQCADT-VMRWVPK 535


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 186 PWPPFEDFPPHLASLARQMYIVLTYLYCV 100
           PW     + P+L  LA   Y+ +T LY V
Sbjct: 29  PWSTLRPYTPYLFILAFGSYLGITLLYNV 57


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
 Frame = -2

Query: 325 PTAGHRPSPMPST*CGPPPSASNDFPPCALSR-------QSTGLEDAPRSLYPSV 182
           PT    P P+ S+   P P      PP  LS        Q TG  D  RS + ++
Sbjct: 415 PTESPPPPPISSSSTTPRPDDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTL 469


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 280 GPPPSASNDFPPCALSRQSTGLEDAPRSLYPSVASIR--GLSPPP 152
           GPPPS SN   P   +  ++    AP    P+ +  R  G +P P
Sbjct: 61  GPPPSYSNSAAPATPAASASSAAPAPA---PAASQNRAYGAAPQP 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,558
Number of Sequences: 5004
Number of extensions: 45478
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)