Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0657
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.60 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 24/92 (26%), Positives = 33/92 (35%)
 Frame = -3

Query: 288 HNAVLRLPHPTTSRRAH*VVSPPGWRTPHAPCTHPWPPFEDFPPHLASLARQMYIVLTYL 109
           H++    PH   S        P   +  H P  HP PP    P     L    +     L
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQNACFCARNEL 492

Query: 108 YCVYRLRTIITNQSSRNRSMKLNNSETVSRKF 13
             + +   IIT+Q    +S +LN   T   KF
Sbjct: 493 MMILKEIKIITDQL---KSEELNAKVTNDWKF 521


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 193 YPSVASIRGLSPPPGVAGSTDVYCPYILVLCLQIEDYN 80
           +P +A I+    P  + G+T +   Y+L     I D N
Sbjct: 172 FPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDEN 209


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 129 TSVEPATPGGGESPRMEATDGYKERGASSN 218
           T    +TPG G  P   A  G  +  +S++
Sbjct: 229 TMATTSTPGSGSLPASPADSGVSDVESSTS 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,270
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)