Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0655
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LRT2 Cluster: Resolvase, N-terminal domain; n=1; Clos...    33   4.5  
UniRef50_Q23AN0 Cluster: Hypothetical repeat containing protein;...    33   7.8  

>UniRef50_A6LRT2 Cluster: Resolvase, N-terminal domain; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Resolvase,
           N-terminal domain - Clostridium beijerinckii NCIMB 8052
          Length = 537

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = -1

Query: 534 NSIASYI*KTAQNVYKIISFFLLAHYYNDQIVDDNLIYLIQGQIESS 394
           N I SY  K +++ YK IS ++L+   ++ +VDDNL   +Q Q++ +
Sbjct: 260 NGILSYNKKDSKDKYKDISEWILSVSKHEGVVDDNLWIKVQRQLDKN 306


>UniRef50_Q23AN0 Cluster: Hypothetical repeat containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Hypothetical
           repeat containing protein - Tetrahymena thermophila
           SB210
          Length = 714

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 576 TVASNLRLILLFKFNSIASYI*KTAQNVYKIISFFLLAHYYNDQIVDDNLIYLIQGQIES 397
           T  +N  LI      SI S++      ++K I +FL  +  + +++ DNL YL+  +  +
Sbjct: 341 TFKNNQALIYGQNIGSIPSHLMFKRDGIFKPIDYFLFENIRSGEVLQDNLFYLLDEEFNT 400


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,547,965
Number of Sequences: 1657284
Number of extensions: 7848899
Number of successful extensions: 16185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16182
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)