Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0655
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    28   4.9  
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    28   4.9  
Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 396 SIQSVLESNISNYRLQSDHYNNVPRE 473
           S QSV+ S I  + L+S+HY N P E
Sbjct: 59  SPQSVIYSKILKHFLESNHYTNDPNE 84


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 396 SIQSVLESNISNYRLQSDHYNNVPRE 473
           S QSV+ S I  + L+S+HY N P E
Sbjct: 55  SPQSVIYSKILKHFLESNHYTNDPNE 80


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 396 SIQSVLESNISNYRLQSDHYNNVPRE 473
           S QSV+ S I  + L+S+HY N P E
Sbjct: 59  SPQSVIYSKILKHFLESNHYTNDPNE 84


>Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical
           protein F08G5.1 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 83  KN*NENLIILYLSRSVRVCARGGDETRFLSELKSFRYYLVRTAKKSLLN 229
           KN N  +I+   ++  R+  RG D   FLS ++ F  Y+  T  K  LN
Sbjct: 68  KNTNLFVIVNNQAQGFRLTLRGEDRENFLSTVRKFA-YISETPVKDHLN 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,167
Number of Sequences: 27780
Number of extensions: 199196
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)