Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0654
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   254   9e-69
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.0  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   3.5  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   6.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   6.2  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   8.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   8.2  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  254 bits (622), Expect = 9e-69
 Identities = 114/188 (60%), Positives = 139/188 (73%), Gaps = 1/188 (0%)
 Frame = +3

Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 336 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 515
           T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VG
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132

Query: 516 NNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGD-RGIP 692
           NNTP+FF+RDP  FP FIHTQKRNP   +KD  MFWD+L+   E+IHQ++ LF D  G P
Sbjct: 133 NNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTP 192

Query: 693 DGYRHMNG 716
             YR M+G
Sbjct: 193 YSYRFMDG 200


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 534 FIRDPTLFPSFIHTQKRNPATHLKDP 611
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 474 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 349
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 534 FIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQ-LLYLFGDRG 686
           F  +P  +   +H    N    L     FW F +++PE  H+ +L+L G  G
Sbjct: 34  FPNEPVDYEGRMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPG 85


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +3

Query: 561 SFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYRHMN 713
           ++ HT+K       K     WDF   R E + +LL  F        +  +N
Sbjct: 325 NYEHTEKELSVLQFKGVSSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 249 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 383
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 415 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 251
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 448 VSADPLSPPTVENLTAIGVLLPMDSNTL 365
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 278
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 279 IPE 287
             E
Sbjct: 160 AEE 162


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 217 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 50
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,724
Number of Sequences: 5004
Number of extensions: 71517
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)