Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0654
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 221 3e-58
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 219 2e-57
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 217 1e-56
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 31 0.91
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 1.2
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 1.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 30 1.6
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 6.4
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 6.4
12_02_0674 - 21745321-21746223,21746229-21747608 28 8.5
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 8.5
05_03_0586 + 15782645-15782721,15782781-15783405 28 8.5
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 28 8.5
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 28 8.5
02_04_0493 + 23435395-23436003 28 8.5
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 221 bits (541), Expect = 3e-58
Identities = 101/187 (54%), Positives = 132/187 (70%)
Frame = +3
Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77
Query: 336 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 515
THDIT + A + G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +G WDLVG
Sbjct: 78 THDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVG 137
Query: 516 NNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPD 695
NN P+FFIRD FP +H+ K NP +H+++ DF + PE++H +LF D GIP
Sbjct: 138 NNFPVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLFDDIGIPA 197
Query: 696 GYRHMNG 716
YRHM+G
Sbjct: 198 DYRHMDG 204
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 219 bits (534), Expect = 2e-57
Identities = 101/187 (54%), Positives = 130/187 (69%)
Frame = +3
Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
TT +GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89
Query: 336 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 515
THD+T + A S G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G WDL+G
Sbjct: 90 THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLG 149
Query: 516 NNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPD 695
NN P+FFIRD FP IH K NP +H+++ +DFL+ PE++H +LF D GIP
Sbjct: 150 NNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPT 209
Query: 696 GYRHMNG 716
YRHM+G
Sbjct: 210 DYRHMDG 216
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 217 bits (529), Expect = 1e-56
Identities = 101/189 (53%), Positives = 132/189 (69%)
Frame = +3
Query: 150 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 329
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+F
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFF 75
Query: 330 EVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 509
EVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G +DL
Sbjct: 76 EVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDL 135
Query: 510 VGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGI 689
VGNN P+FFIRD FP +H K +P T++++ DF + PE++H +LF D GI
Sbjct: 136 VGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGI 195
Query: 690 PDGYRHMNG 716
P YRHM G
Sbjct: 196 PLNYRHMEG 204
>04_04_1155 - 31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 31.1 bits (67), Expect = 0.91
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +3
Query: 225 LLQDVNFLDEMSSFDRERI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 392
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 725 VLLDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 782
Query: 393 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 554
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 783 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGIV-DPNL 827
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 549 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 424
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 195 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 374
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 375 -ESIG 386
E IG
Sbjct: 91 KEQIG 95
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +3
Query: 225 LLQDVNFLDEMSSFDRERI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 392
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 761 VLIDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 818
Query: 393 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 554
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 819 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGLV-DPKL 863
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 247 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 137
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 522 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 430
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.9 bits (59), Expect = 8.5
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -1
Query: 505 SHTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTA--IGVL-LPMDSNTLAALYLVMS*V 335
S TPS+ T+ + S T S PLS T++ T G L P D +S
Sbjct: 589 SSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTRAGDLSTA 648
Query: 334 TSKYPKAPAPL-ACTTRSGIRSLS 266
TSK P AP TT S I S S
Sbjct: 649 TSKIPTAPGTSELSTTTSKISSTS 672
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 210 KNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFG 323
KNG ++LQ V+ + S D ++I + H G G FG
Sbjct: 397 KNGGSILQKVDNIMIFSKDDLKKITKNNSHVIGQGGFG 434
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 307 PLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLV 158
P+ C + + +++ DD + FLPT C ++L+ GAP L+
Sbjct: 143 PIVCCSSACWKAVGHDDQQCGHCPGQRRG--FLPTGCCSLLLSIGAPSLL 190
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 564 NSGIMLDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLHQLL 415
N ++ + L + W Q P + Y T++++ GHE YQ+ LL
Sbjct: 7 NPCVLDNKLEQPWPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 510 VGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGI 689
V N P++ +D T + + RN H + F T+ P+ + L+Y G G
Sbjct: 243 VVNGIPLYDFKDITQ----LGRESRNTLRHSHEQGQQVVFETITPDDVATLIYTSGTSGT 298
Query: 690 PDG 698
P G
Sbjct: 299 PKG 301
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 247 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 122
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044,298
Number of Sequences: 37544
Number of extensions: 461451
Number of successful extensions: 1250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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