Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0654
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               35   0.076
SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   30   1.6  
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)                   30   2.2  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)          29   3.8  
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  29   3.8  
SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28)                   29   5.0  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   6.6  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    28   6.6  
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                 28   6.6  
SB_42734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   28   8.7  
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   8.7  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 552 LFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIP 692
           +F  F   + ++       PD  WD++T+RP + H   +L+G RG P
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRP-SAHMFWWLYGARGEP 57


>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 433 LSPPTVENLTAIGVLLPMDSNTLAAL------YLVMS*VTSKYPKAPAPLACTTRSGIRS 272
           LSP TV NLT   V  P+ +N LA +      Y+V     SK  +      C T    + 
Sbjct: 154 LSPLTV-NLTGSCVSGPIRTNDLALITCPSEKYIVKQSALSKCFQNDKAFLCPTNILHKI 212

Query: 271 LSKDDISSRKLTSCNKAGPFLPTVC 197
            S D +   KLT    A  FLPT C
Sbjct: 213 GSFDWLGHTKLTKLKYARNFLPTSC 237


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 189 TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 368
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
          Length = 361

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 597 HLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYRHMNG 716
           H K P++F    T  P+TI  L  LF   G+P+     NG
Sbjct: 201 HSKWPEIFATSSTTAPKTIEMLAGLFASHGLPEEMVSDNG 240


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +3

Query: 204 VGKNGPALLQDVNFLDEMSSFDRERIPERVVH------AKGAGAFGYFEVTHDITKYSAA 365
           +  N   LLQ + F  +M  F  ++   R +H      +KG     YF    DI   + +
Sbjct: 258 ITSNAMGLLQSLTFFTQMRFFCHKQAVGRTLHILTTPDSKGKAVVDYFSAKTDILPSACS 317

Query: 366 KVFESIGKRTPIAVRFSTVGGESGSA 443
              E  G    +  R    G +S  A
Sbjct: 318 SFTEGAGNNALLTGRCHRWGRDSSGA 343


>SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 648 SLVLRSKSPKTCLDLSDVLQ---GFSSEYG*NSGIMLDLL*RKWEYYFQLNPTLH 493
           +L  R +  K    L D+L+   GF      + G+ LD L  K+ Y+F  N TLH
Sbjct: 200 NLTKREEEGKLFNQLLDILKFYTGFEINDVSDCGVQLDKLIVKYHYFFYRNKTLH 254


>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
          Length = 1623

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 648  SLVLRSKSPKTCLDLSDVLQ---GFSSEYG*NSGIMLDLL*RKWEYYFQLNPTLH 493
            +L  R +  K    L D+L+   GF      + G+ LD +  K+ Y+F  N TLH
Sbjct: 1340 NLTKREEEGKLLNQLLDILKFYTGFEINDVSDCGVQLDKMIVKYHYFFYRNKTLH 1394


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = +3

Query: 3    PGLQEFGTRLRGIKQRTPHSKKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVG 182
            PG  +   +++  K        G Y +A++DPAT  L  Y     +   +    + A   
Sbjct: 1054 PGTWQSCNQIKLHKSPDVRLSDGVYMIATKDPAT-YLPVYCDVTSEPGAYTLLVTSANGN 1112

Query: 183  IKTAIQTVGKNG-PALLQD---VNFLDEMSSFDRERIPERVVHAKGAGAFG 323
             K    TV   G P+L++D   +++ D++ S    +  +  + A+  GA+G
Sbjct: 1113 WKPQEVTVRNQGSPSLIRDYSILDYADDIKSASHAKTLKYKLEARERGAWG 1163


>SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 597 HLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYRHMNG 716
           H K P++     T+ P+TI  L  LF   G+P+     NG
Sbjct: 147 HSKWPEIIATSSTIAPKTIEMLAGLFASHGLPEEMVSDNG 186


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 502  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 383
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 396 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 509
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 106 SVAGSLEAILYVPFLLCGVRCLIPRSLVPNSCSP 5
           S+  +  A +YV ++ C  RC+  R L+P  CSP
Sbjct: 30  SMCSTSRAHVYVFYIACSCRCVSDRVLMP-MCSP 62


>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/31 (25%), Positives = 23/31 (74%)
 Frame = -2

Query: 666 KEVDGWSLVLRSKSPKTCLDLSDVLQGFSSE 574
           ++V G   +++ ++ K C+++SD+++G ++E
Sbjct: 13  RKVGGLGFLVKERASKPCVEISDIVKGSAAE 43


>SB_42734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 1  PPGCRNSARGSVVLNNERRIV 63
          PPGCRNS     VLN E+  +
Sbjct: 18 PPGCRNSIAQCRVLNKEKHYI 38


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 570 HTQKRNPATHLKDPDMFW 623
           HT+ RNP T +++P+ +W
Sbjct: 531 HTRIRNPLTRIRNPEPYW 548


>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1558

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -1

Query: 646  SGLKVKKSQNMSGSFRCVAGFLF*VWIKLGNNVGSLIKKMGVLFPTKSHTPSSV*NFTAK 467
            +G++  + Q      RCV   +  VWIK G +  +L K+M      K +      N    
Sbjct: 1459 NGIQSPRMQTKMAEDRCVCTEVSNVWIKRGKSADALPKRM----CEKCNKEKQEGNGITA 1514

Query: 466  PRGSRTVSADPLSPPT 419
             +  R  S  PLS P+
Sbjct: 1515 VKTRRNSSDSPLSSPS 1530


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 148 PGESFKVFL*LMSWSVAGSLEAILYVP 68
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,303,887
Number of Sequences: 59808
Number of extensions: 548785
Number of successful extensions: 1514
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)