BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NRPG0654 (718 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 25 0.54 DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.8 >AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein protein. Length = 352 Score = 25.4 bits (53), Expect = 0.54 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 492 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 397 HQ + QQ+L+ HEQ+ Q QQS Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217 Score = 21.4 bits (43), Expect = 8.8 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = -2 Query: 495 HHQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 397 H Q + Q + +Q+ Q H H + + QQS Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQS 210 >DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine receptor alpha9subunit protein. Length = 431 Score = 21.4 bits (43), Expect = 8.8 Identities = 7/17 (41%), Positives = 11/17 (64%) Frame = +3 Query: 456 DPRGFAVKFYTDDGVWD 506 D +GF + YT++ WD Sbjct: 202 DKKGFHMDGYTNNSKWD 218 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 222,095 Number of Sequences: 438 Number of extensions: 5384 Number of successful extensions: 6 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22170330 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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