Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0653
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.74 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.1  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   9.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 434 GMMYTLYKNHFNKLKGNEH 490
           G + T Y++HFN   GN H
Sbjct: 35  GPLRTSYQHHFNSPAGNAH 53


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 191 DKTRKMSQEKPIFDYHEESQTEKLARKSKESPFMVIGI 304
           +KT+     K ++D   + QTE +  KS    F  + +
Sbjct: 17  EKTKAQLANKELWDQFHDLQTEMIITKSGRRMFPALNL 54


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 192 SCLGNSSLPSVEKHTVLNETPIGN 121
           SC    ++   +KH + N+ P GN
Sbjct: 140 SCDWPENVDGCQKHPLCNDDPNGN 163


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 442 HHACSKCTDYSPLSDHSELH 383
           H  CSKCT+         +H
Sbjct: 72  HSGCSKCTEKQKEGSRKIIH 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,782
Number of Sequences: 336
Number of extensions: 2780
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)