Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0653
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               61   7e-10
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        30   1.5  
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)                    29   2.6  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 28   5.9  
SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)                      28   7.9  

>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 34/95 (35%), Positives = 52/95 (54%)
 Frame = +2

Query: 179 LPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXX 358
           +P   +T+++S+     +   E++TEKL RKSK  PF+ IGI G                
Sbjct: 1   MPIPSETKQLSESWQTRE-ERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRG 59

Query: 359 XMSTTVFLMQFRVIAQGTVVGALTAGMMYTLYKNH 463
            MST+ ++M+ RVIAQ  VVG++  GM  T Y+ +
Sbjct: 60  PMSTSRYIMRLRVIAQSCVVGSIMVGMGITAYQGN 94


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +2

Query: 239  EESQTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXXXMSTTVFLMQFRVIAQGTVV 418
            +E+  EK ARK KE+PF+ IG   L                +     +M+ RV+AQG+ +
Sbjct: 3091 DETTKEKFARKVKENPFVPIG-CALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTI 3149

Query: 419  GALTAGMMYT 448
             AL  G   T
Sbjct: 3150 VALVGGCFAT 3159



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +2

Query: 380  LMQFRVIAQGTVVGALTAGMMYTLYKNHFNK 472
            +M+ RV+AQG+ + A+  G+ YT+ K+H NK
Sbjct: 3181 MMRARVLAQGSTLIAVIGGLGYTMLKDHANK 3211


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 161  TEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPF 289
            T G  L+P  +  R+  ++KPI    E+ + +KL+ K  +S F
Sbjct: 1240 TSGVRLVPHVESNRERKRKKPIRKPEEDKKVKKLSEKPTKSSF 1282


>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
          Length = 485

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 179 LPRHDKTRKMSQEKPIFDYHEESQTEK 259
           LP H  +    + +PIFDY +ES+ E+
Sbjct: 43  LPEHTDSSGYQENRPIFDYLKESEEER 69


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 168  PSVEKHTVLNETPIGNTITDFTI 100
            P+V  HTV   T  G+T+TD T+
Sbjct: 1358 PTVTDHTVTGHTVTGHTVTDHTV 1380


>SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 365 STTVFLMQFRVIAQGTVVGALTAGMMYTLYKN 460
           S ++++M  RV   G ++GA+  G++YT Y++
Sbjct: 190 SNSMYVMSVRVTL-GALIGAVLCGLIYTCYRD 220


>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 216 SCDIFLVLSCLGNSSLPSVEKHTVLNETPIGNTITDFTIYYYPIFVISAIHCRLD 52
           S  IF  L   G  SL     HT LN+TP+ +++ D +  Y    + ++ H R D
Sbjct: 80  SVTIFPDLHHGGPFSLGGESVHTTLNDTPLHSSVIDHSPMYPQDTIRASNHDRQD 134


>SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 115 NRFHNLLLSNICNIGNPLSTRR 50
           N+ HN+++SN C+ G+PL   R
Sbjct: 19  NKCHNIVISNSCSPGDPLVLER 40


>SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)
          Length = 371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 158 STEGRLLLPRHDKTRKMSQEKP--IFDYHEESQTEKLARKSKESPFMVIGI 304
           STEG  +  +  +T K  Q+KP  I +Y+  ++ E L  +  +   M +G+
Sbjct: 280 STEGDTMPSKGSETAKCDQDKPFCIDEYNSATELENLGLECLKQHLMSLGL 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,921,828
Number of Sequences: 59808
Number of extensions: 361209
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)