Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0653
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical pr...    29   2.2  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   3.9  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    29   3.9  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   3.9  
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    28   6.8  
U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical...    27   9.1  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    27   9.1  

>Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical
           protein F49H6.2 protein.
          Length = 212

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 21  IEVRQVESETRRVDSGLPILQILDNSRL*NLLSCCRSVFHSVPC 152
           I  +QVES  +  D  LPI QIL  S     ++   +   +VPC
Sbjct: 22  IPTQQVESNRKICDHHLPIFQILATSAAPTTMTAIVTTTSTVPC 65


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 155 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 277
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 155 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 277
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 155 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 277
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 LLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESP 286
           L  P+H + R+   +K   + H+E   ++L R+ +  P
Sbjct: 10  LNFPKHKRARRKKYQKEYQERHKEEMMQQLGRRFQNQP 47


>U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical
           protein ZC196.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 128 IGVSFSTVCFSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPFM 292
           I +SF     STE ++ L   D+++ +S E  + D     +TE     S +  F+
Sbjct: 77  INISFVNCTKSTEMQISLDLQDESKNISVETELQDSSSNEKTELTIEDSAQKSFL 131


>AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical
           protein Y105E8A.20 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 129 IGNTITDFTIYYYPIFVISA 70
           IG  IT F +YY+P F+++A
Sbjct: 154 IGKDITKFHLYYWPAFLMAA 173


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 129 IGNTITDFTIYYYPIFVISA 70
           IG  IT F +YY+P F+++A
Sbjct: 248 IGKDITKFHLYYWPAFLMAA 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,900,064
Number of Sequences: 27780
Number of extensions: 257094
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)