Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0653
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19870.1 68416.m02516 expressed protein                             30   1.2  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    28   6.4  
At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene synt...    27   8.5  

>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 33  QVESETRRVDSGLPILQILDNSRL*NLLSCCRSVFHSVP 149
           Q+  E RR++SG P L+++D S++  +L   R  F  +P
Sbjct: 727 QILPEARRIESGKPTLRVMD-SKIAEILERLRRYFSVIP 764


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 483 FPLSLLKWFL*RVYIMPAVSA 421
           FP+    WFL R+Y +P VSA
Sbjct: 90  FPIEEHGWFLIRIYFLPLVSA 110


>At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene
           synthetase B (KS) (GA2) identical to GI:3056725
           [PMID:9536043]; formerly called ent-kaurene synthetase B
          Length = 785

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 31  DKSRARHVESTVDCRYYKYWIIVDCEICYRVADRCFIQYRVL 156
           D+     ++S +D   Y+YW+  D EIC  +A  C + +R+L
Sbjct: 287 DRDFKTEIKSILD-ETYRYWLRGDEEICLDLA-TCALAFRLL 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,824
Number of Sequences: 28952
Number of extensions: 230988
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)