Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0652
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040653-3|ABS83855.1| 390|Caenorhabditis elegans Hypothetical ... 29 3.6
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 28 4.7
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 28 4.7
>AF040653-3|ABS83855.1| 390|Caenorhabditis elegans Hypothetical
protein K05F6.4 protein.
Length = 390
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 358 LFRTLKMN*SDLLFIEIKNKRYKPFNVRRFLLSKDFFCNI 477
+FR +K+ ++L + +KR K F +R+F + KD CNI
Sbjct: 84 IFRNMKI--TELTCCSLISKRTKHF-IRQFCIFKDLLCNI 120
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical
protein C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 805 GFSIVDYKDPTHRDESVIVVQSLV 828
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical
protein C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 827 GFSIVDYKDPTHRDESVIVVQSLV 850
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical
protein C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 618 GFSIVDYKDPTHRDESVIVVQSLV 641
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
protein C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 925 GFSIVDYKDPTHRDESVIVVQSLV 948
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical
protein C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 805 GFSIVDYKDPTHRDESVIVVQSLV 828
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical
protein C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 827 GFSIVDYKDPTHRDESVIVVQSLV 850
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical
protein C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 618 GFSIVDYKDPTHRDESVIVVQSLV 641
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
protein C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 925 GFSIVDYKDPTHRDESVIVVQSLV 948
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical
protein C52A11.4c protein.
Length = 2202
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 636 GFSIVDYKDPTHRDESVIVVQSLV 659
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 542 GFSAVTIKDDRNRDKRILVLQSIL 471
GFS V KD +RD+ ++V+QS++
Sbjct: 596 GFSIVDYKDPTHRDESVIVVQSLV 619
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,534
Number of Sequences: 27780
Number of extensions: 201392
Number of successful extensions: 415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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