Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0652
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38160.2 68417.m05388 mitochondrial transcription termination...    28   4.4  
At1g12880.1 68414.m01496 MutT/nudix family protein similar to di...    27   7.7  

>At4g38160.2 68417.m05388 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 363

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 319 EFYEHGLIYTREVLFRTLKMN*SDLLFIEIKNKRYKPFNVRRFLLSKDFFCN 474
           EF+ HGL    E  F+ +K N  D    E+ +   K F+  +F  S+ F CN
Sbjct: 283 EFFHHGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFH-EKFGFSEVFNCN 333


>At1g12880.1 68414.m01496 MutT/nudix family protein similar to
           diphosphoinositol polyphosphate phosphohydrolase [Homo
           sapiens] GI:3978224; contains Pfam profile PF00293:
           NUDIX domain
          Length = 203

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 192 ETRILRTERSELRNSTRVDARTSVSAFYCF 281
           + R LRTE   + +S++++  + +  +YCF
Sbjct: 171 DERRLRTEEETVHDSSKLEEESQIDPWYCF 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,647,738
Number of Sequences: 28952
Number of extensions: 175172
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)