Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0650
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0146 - 12274721-12274989,12275090-12275240                       59   4e-09
12_02_0346 - 17776871-17781445                                         31   1.1  
11_02_0068 + 7991816-7992603,7995209-7997177                           29   2.5  
08_02_0648 - 19694538-19696569,19697151-19697998                       28   5.8  
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    28   7.6  
07_03_1367 + 26072270-26072374,26074047-26074724                       28   7.6  

>06_02_0146 - 12274721-12274989,12275090-12275240
          Length = 139

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +3

Query: 222 SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIP 389
           +WCPDC  AEPV+   +       +K ++ +   VGD+  W+D   P+R D R +L  +P
Sbjct: 47  TWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKPTWRDPAHPWRADPRFRLTGVP 106

Query: 390 TLIKWK 407
           TLI+W+
Sbjct: 107 TLIRWE 112


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 204 KLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD--REYWKDKECPFRTDSRSKL 377
           K+P GN+   +  + E + +   S+     + V  DV +   + WK    PFR       
Sbjct: 325 KMPKGNNEKENESDQEKIEKRIQSQ---QFLLVLDDVWEYHEDEWKTLLAPFRKSGTKGN 381

Query: 378 MVIPTLIKWKGVQRLEGSQCS 440
           MVI T  K K  + +E + CS
Sbjct: 382 MVIVTTRKQKIAKMVESTDCS 402


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 258 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLI 398
           +R YLS  DK  I +  D+ D + WK  EC    + R   ++  T I
Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRI 299


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 282 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 401
           +KS   +  DV  ++ WKD +C F +++ +  +++ T I+
Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQ 320


>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +3

Query: 165 SWSPWYFFTFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKE 344
           +W P + F F  +K     +  PD V+     R   +++ K  +F+     D+++   K 
Sbjct: 593 TWHPLFLFGFMSTK-HSSPTIIPDKVKQRS--RKVFADMAKPDVFLE----DQDHLPSKS 645

Query: 345 CPFRTDSRSKLMVI 386
           C F TD   K MVI
Sbjct: 646 CDFVTDMWDKGMVI 659


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 195 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 293
           S +KL DG  W  DC + +P+    + +L+K +
Sbjct: 64  SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,269,140
Number of Sequences: 37544
Number of extensions: 296482
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)