Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0650
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical ...    81   5e-16
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    31   0.96 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    28   6.8  
AF045642-1|AAZ82857.1|  230|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.1 protein.
          Length = 132

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
 Frame = +3

Query: 192 FSGSK-LPDGNSWCPDCVEAEPVVRHYLSELDKS---IIFVYVDVGDREYWKDKECPFRT 359
           F+GSK L  G SWCPDCV AEPVV   + +   +   + FV V VG+RE W+D    FRT
Sbjct: 32  FTGSKILTTGESWCPDCVVAEPVVEEVIKDAAVAGLDVHFVTVFVGNREVWRDPAVGFRT 91

Query: 360 DSRSKLMVIPTLIK-WKGVQRLEGSQCSNRELLQMLFEEED 479
           D   KL  IPTL++     +RL   Q +N+ L++  F EED
Sbjct: 92  DPTLKLTCIPTLLEVGNKAKRLLERQIANKHLVKDFFTEED 132


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -2

Query: 593 LLEELKYFMVDNIIYSYVIVGNLSIRICLKRIGDFSYLIFFFEQHLQKFPIAALASLKPL 414
           ++    +FM+  II   ++   L + I + R+G   + IF+F+ H +KFPI+ +  L   
Sbjct: 76  VIRNATFFMLWPIIPLGIVRSILMLSINIDRLGALYFPIFYFKYH-RKFPISIIVILTLT 134

Query: 413 YSL 405
           Y L
Sbjct: 135 YIL 137


>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 228 CPDCVEAEPVVRHYLSELDKSIIFVY 305
           CP+ +   P+V+H L ELD  ++FV+
Sbjct: 228 CPEFLAYFPLVKHLLEELDMELLFVH 253


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 321 REYWKDKECPFRTDSRSKLMVIPTLIKWKGVQRLEGSQCSNR 446
           R+ +K K  P  TD  S    I     W  +QR+  S C NR
Sbjct: 56  RDVFKKKSSPCETDVNSNAEHIGGESIWGKIQRMSVSNCQNR 97


>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 635 LINNCPISFIIY*WLLEELKYFMVDNI 555
           L   C +SF+++ WLL EL  F + ++
Sbjct: 388 LRRTCLLSFLVFFWLLAELNTFFIKHV 414


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 225 WCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREY 329
           WC  C+ A  +V + L +L KS +   +  G+R Y
Sbjct: 119 WCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTY 153


>AF045642-1|AAZ82857.1|  230|Caenorhabditis elegans Hypothetical
           protein C17H12.13 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 590 LEELKYFMVDNIIYSYVIVGNLSI---RICLKRI 498
           LEE+  F++DN   +  I+ +L I   +ICLK +
Sbjct: 18  LEEIVQFLIDNFAQTEAILASLKIDDDKICLKEL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,640
Number of Sequences: 27780
Number of extensions: 286873
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)