Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0650
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42850.2 68418.m05223 expressed protein                             74   1e-13
At5g42850.1 68418.m05222 expressed protein                             74   1e-13
At5g04260.1 68418.m00417 thioredoxin family protein low similari...    31   0.52 
At5g06690.1 68418.m00756 thioredoxin family protein low similiar...    30   1.2  
At3g56420.1 68416.m06275 thioredoxin family protein similar to t...    29   2.1  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    29   3.6  
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i...    29   3.6  
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA...    27   8.4  
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA...    27   8.4  
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i...    27   8.4  

>At5g42850.2 68418.m05223 expressed protein
          Length = 134

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/65 (46%), Positives = 39/65 (60%)
 Frame = +3

Query: 216 GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTL 395
           G SWCPDCV AEPV+   L E  + +  +    GDR  W+    P+R DSR KL  +PTL
Sbjct: 44  GQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTPAHPWRVDSRFKLTGVPTL 103

Query: 396 IKWKG 410
           ++W G
Sbjct: 104 VRWDG 108


>At5g42850.1 68418.m05222 expressed protein
          Length = 134

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/65 (46%), Positives = 39/65 (60%)
 Frame = +3

Query: 216 GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTL 395
           G SWCPDCV AEPV+   L E  + +  +    GDR  W+    P+R DSR KL  +PTL
Sbjct: 44  GQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTPAHPWRVDSRFKLTGVPTL 103

Query: 396 IKWKG 410
           ++W G
Sbjct: 104 VRWDG 108


>At5g04260.1 68418.m00417 thioredoxin family protein low similarity
           to SP|P29429 Thioredoxin. [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile: PF00085
           Thioredoxin
          Length = 192

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 222 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 401
           +WC  C+  +P +    +E    + F +VDV           P+R  SR+ +  +PT+  
Sbjct: 108 AWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV--------NAVPYRLVSRAGVTKMPTIQL 159

Query: 402 WKGVQR 419
           W+  Q+
Sbjct: 160 WRDGQK 165


>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
           to SP|P34723 Thioredoxin {Penicillium chrysogenum};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 210

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 222 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 401
           SWC  C+  +P +    +E +    F YVDV         + P     R  +  +PT+  
Sbjct: 128 SWCRKCIYLKPKLEKLAAEYNNRAKFYYVDV--------NKVPQTLVKRGNISKMPTIQL 179

Query: 402 WK 407
           WK
Sbjct: 180 WK 181


>At3g56420.1 68416.m06275 thioredoxin family protein similar to
           thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 100

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 225 WCPDCVEAEPVVRHYLSELDKSIIFVYVDV 314
           WC  C + EPV R   S    S+IFV VDV
Sbjct: 19  WCVPCKKIEPVFRDLASRY-PSMIFVTVDV 47


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 204  KLPDGNSWCPDCVEAEPVVRHYL 272
            ++PDGN +CP CV A+ + +  L
Sbjct: 1323 RIPDGNWYCPSCVIAKRMAQEAL 1345


>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
           identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
           {Arabidopsis thaliana}
          Length = 119

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 222 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD 320
           SWCP C    P+      +   S IF  VDV +
Sbjct: 38  SWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDE 70


>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
           GI:3021506
          Length = 374

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 431 ASLKPLYSLPFY*SRYDHQLRATVR 357
           A+++P YSLP Y +RYD     T+R
Sbjct: 134 ANVRPCYSLPGYKTRYDDVDLITIR 158


>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
           [Nicotiana tabacum]
          Length = 374

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 431 ASLKPLYSLPFY*SRYDHQLRATVR 357
           A+++P YSLP Y +RYD     T+R
Sbjct: 134 ANVRPCYSLPGYKTRYDDVDLITIR 158


>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
           identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA  SUVH5 (SUVH5) GI:13517750
          Length = 794

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 335 LPIFSISNIDIDKNDTFVELTKVMPDDW 252
           LPI +++N+D +K   F+   K++  DW
Sbjct: 551 LPICAVNNLDDEKPPPFIYTAKMIYPDW 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,934
Number of Sequences: 28952
Number of extensions: 256905
Number of successful extensions: 703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)