Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0649
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   2.9  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   2.9  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   6.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   6.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   6.6  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 272 NFNNKIDLEQLFNTFHGICNTNAEKQSLCPNNYENSF 382
           N  NK  L  L N FH   +    K SLC    +++F
Sbjct: 70  NEENKTKLAALLNRFHEETDNFLSKLSLCQQEIQDTF 106


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 179 FSWGINYSLWSFRCSIPFFKYVVKCLGVLS 90
           +S G+ + +W+F  + P  KY +K    LS
Sbjct: 109 YSGGLGFEVWAFMANDPSMKYWLKLTNQLS 138


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = -3

Query: 474 LIRNISLSP*TLL-----KNGEDNNKKLHIVL 394
           LI N+SLSP  L+     K+ +  N +LHIVL
Sbjct: 601 LINNLSLSPYCLIKFIGDKDSDFENTRLHIVL 632


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 LNHIFKERNTTAKTPQRIINSP 173
           LNH+FK R+   K   RI  +P
Sbjct: 225 LNHVFKTRDRVLKNSARISQNP 246


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 335 NAEKQSLCP-NNYENSFI*EVKTIWSFLLLSSPFFNNV 445
           NA  +SLC   +YENSFI  + +I+       PF  ++
Sbjct: 141 NASYKSLCKLYSYENSFIVVLNSIFVVSSCIGPFLGSI 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,296
Number of Sequences: 5004
Number of extensions: 50053
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)