Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0649
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618           29   3.0  
04_03_0340 - 14634664-14634770,14634968-14635076,14635150-146352...    29   3.9  
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    29   3.9  
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309...    27   9.0  
01_01_0946 - 7442907-7443284,7443797-7445122                           27   9.0  

>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
          Length = 748

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 172 GELIILCGVFAVVFLSLNMWLSVLEYCHTKMIYLSG*DGYSVRFSFSCHHIHKVLLH 2
           G   +  G ++ VF S   W++  + CH + ++  G DG         HH+    +H
Sbjct: 59  GSFNVTAGDYSTVFRS---WVAGADCCHWEGVHCDGADGRVTSLDLGGHHLQADSVH 112


>04_03_0340 -
           14634664-14634770,14634968-14635076,14635150-14635236,
           14635325-14635392,14635929-14636076
          Length = 172

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 525 EKNNLNSKMFSTLCYMYIPNAVTASE 602
           E+ N++++ + T CY Y+PN V  S+
Sbjct: 33  EEQNISNENWRTNCYEYLPNTVDESQ 58


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 414 CCCPHHSLTMSKVTVIYF*SKTISFEC 494
           CCCPH S T S+V         I F C
Sbjct: 131 CCCPHRSYTYSRVAYALSLILLILFTC 157


>03_06_0410 -
           33728507-33729415,33729511-33729654,33730054-33730920,
           33731371-33731913
          Length = 820

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 257 SSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLCPNN 367
           + M INF   +++E  FNT  G  + +   +  CPNN
Sbjct: 668 ADMFINFIQNLEIESEFNT--GNSSGSTVSKDSCPNN 702


>01_01_0946 - 7442907-7443284,7443797-7445122
          Length = 567

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 254 ESSMIINFNNKIDLEQLFNTFHGICNTNAEKQSLCPNNYENSFI*EVKTIWSFLLLSSPF 433
           ES  ++N   K+D   L +T   IC TN        N  EN    E++  +  L +SS  
Sbjct: 155 ESMTLVN-GEKLDESTLIST---ICETNTSDTDFLANKSENFNGNEIEESFEQLSISSDI 210

Query: 434 FNNV 445
            NN+
Sbjct: 211 GNNL 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,939
Number of Sequences: 37544
Number of extensions: 242402
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)