Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0649
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    29   2.7  
Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 346 LLCI-CITYSMKSVEKLFKIYFIIKVYYHTTFH*TRVHILL 227
           +LC+ C  YS  +++K  K++F  K  +HT      +H+++
Sbjct: 31  ILCVPCTIYSFLAIQKATKLHFNSKCIFHTLTIFAFIHMIV 71


>Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical
           protein F20E11.10 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -2

Query: 403 YCLDFLNEAILIIVGTKRLLLCICITYSMKSVEKLFKIYFIIKVYYHTTFH*TRVHILLP 224
           YC   +  AI++I   +  ++C   T+S K   + FK  F+   Y+  TF  + +  L+P
Sbjct: 106 YCFGLMFIAIVVIFENRFRVIC---TFSWKPKWESFKSMFMPFHYFIYTFMFSIIFFLVP 162

Query: 223 EK 218
           ++
Sbjct: 163 DQ 164


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 567 STMWKTFYYLNYFSLIYYSN 508
           S  WKTFYY N F L  +S+
Sbjct: 651 SKFWKTFYYKNDFKLCPWSS 670


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,935
Number of Sequences: 27780
Number of extensions: 265855
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)