Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0649
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 592 VTALGIYI*HNVENILLFKLFFSHILL*CLEFKHSKLIVFD*KYITVT 449
           VT  G Y     E +   KL + +        + SKL VFD +Y+T T
Sbjct: 99  VTVTGTYQLTETELVFGAKLAWRNATRCIGRIQWSKLQVFDCRYVTTT 146


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 537 NYFSLIYYSNV*SLNIQSLLFLIRNISLSP*TLLKNGEDNNKKLHIVLTS*MKLF 373
           N F +I  +N         +FLI     S    LK  + NN+ LHI+ TS  K+F
Sbjct: 61  NIFKIIKSTNEKITRYIIRMFLISQQKTSK---LKIYKWNNQILHILWTSYKKVF 112


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 537 NYFSLIYYSNV*SLNIQSLLFLIRNISLSP*TLLKNGEDNNKKLHIVLTS*MKLF 373
           N F +I  +N         +FLI     S    LK  + NN+ LHI+ TS  K+F
Sbjct: 44  NIFKIIKSTNEKITRYIIRMFLISQQKTSK---LKIYKWNNQILHILWTSYKKVF 95


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 NNFSTLFMEYVIQMQRSSLFVP 362
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 NNFSTLFMEYVIQMQRSSLFVP 362
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 576 YTYSTMWKTFYYLNYFSLIYYSNV*SLNIQSL 481
           Y Y+     + Y NY   +YY N   +NI+ +
Sbjct: 322 YNYNNNNYKYNYNNYNKKLYYKNY-IINIEQI 352



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 585 HWEYTYSTMWKTFYYLNY 532
           +++Y Y+   K  YY NY
Sbjct: 328 NYKYNYNNYNKKLYYKNY 345


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/23 (26%), Positives = 10/23 (43%)
 Frame = -1

Query: 173 WGINYSLWSFRCSIPFFKYVVKC 105
           W +N  +W +     FF+    C
Sbjct: 407 WSVNAGMWMWLSCSSFFQQFFHC 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,900
Number of Sequences: 438
Number of extensions: 3341
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)